Miyakogusa Predicted Gene

Lj0g3v0182089.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0182089.1 Non Chatacterized Hit- tr|I1LW54|I1LW54_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,27.56,1e-16,GRAS,Transcription factor GRAS; coiled-coil,NULL;
seg,NULL,CUFF.11588.1
         (568 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66350.1 | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24...    59   7e-09
AT5G66770.1 | Symbols:  | GRAS family transcription factor | chr...    57   3e-08
AT3G50650.1 | Symbols:  | GRAS family transcription factor | chr...    57   4e-08
AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription fac...    55   1e-07
AT3G03450.1 | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279 RE...    55   1e-07
AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcri...    52   1e-06
AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription fac...    52   1e-06
AT5G48150.2 | Symbols: PAT1 | GRAS family transcription factor |...    51   2e-06
AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor |...    51   2e-06
AT1G07520.1 | Symbols:  | GRAS family transcription factor | chr...    50   5e-06

>AT1G66350.1 | Symbols: RGL1, RGL | RGA-like 1 |
           chr1:24748327-24749862 FORWARD LENGTH=511
          Length = 511

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 180 VSLPHLMEAYVETKGKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTN--HGDYL 237
           V L H + A  E   +    LA+A+++ +    + +  ++ ++A+Y ++ +    +  Y 
Sbjct: 150 VRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYRIYP 209

Query: 238 RGE-ASKNFGDALRV-FHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWA 295
           R + A  +F D L++ F++  P+ K A F A  AILE V    + +H+ID  L HG QW 
Sbjct: 210 RDDVALSSFSDTLQIHFYESCPYLKFAHFTANQAILE-VFATAEKVHVIDLGLNHGLQWP 268

Query: 296 PMIETIA 302
            +I+ +A
Sbjct: 269 ALIQALA 275


>AT5G66770.1 | Symbols:  | GRAS family transcription factor |
           chr5:26660723-26662477 FORWARD LENGTH=584
          Length = 584

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 148/384 (38%), Gaps = 51/384 (13%)

Query: 201 AEAILRRMSQKVNPRGDSLERLASYLSQDMTNH------GDYLRGEASKNFGDALRVFHQ 254
           A   L ++ + V+  GD  ER+A Y ++ ++N              ++++   + +  + 
Sbjct: 235 ASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLILSYKTLND 294

Query: 255 GVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWAPMIETIAKFHKSLKLTSIR 314
             P+ K A   A  AILEA  E  + IHI+DF +  G QW  +++ +A    S K T IR
Sbjct: 295 ACPYSKFAHLTANQAILEAT-EKSNKIHIVDFGIVQGIQWPALLQALAT-RTSGKPTQIR 352

Query: 315 LD-------EESPECVSTPLNFEETRRQLYEHAKSCXXXXXXXXXXXXXXXXXIKKMKKK 367
           +         ESPE      +   T  +L + AK                       +  
Sbjct: 353 VSGIPAPSLGESPEP-----SLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVD 407

Query: 368 GGRREFLAFNCMVGLLDLSDARLVSPLQSTSTQVWRKREQAMEFLKVAEDLINTSDCKGI 427
               E LA N M+ L  L        L  T T V    + A+   K        S    +
Sbjct: 408 PD--EVLAVNFMLQLYKL--------LDETPTIV----DTALRLAK--------SLNPRV 445

Query: 428 ITSGDGDAFEKMKNNCDFRSFIEGHLVHYQAWLESIESHFTPRFSEERTAIEVLFEAPCV 487
           +T G+   +E   N   F + ++  L  Y A  ES+E +   R SEER  +E       +
Sbjct: 446 VTLGE---YEVSLNRVGFANRVKNALQFYSAVFESLEPNLG-RDSEERVRVERELFGRRI 501

Query: 488 SXXXXXXXXXXXXXXXXXXXHQEQMM---SLEGCRLSNNILLEAREVL-NGSEGSYEARI 543
           S                       +M     E  +LSN  + +A+ +L N +  +  + +
Sbjct: 502 SGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIV 561

Query: 544 EGQSGNVLVLEWKGTQLLRLSTWK 567
           E + G  + L W    LL LS+W+
Sbjct: 562 ESKPG-FISLAWNDLPLLTLSSWR 584


>AT3G50650.1 | Symbols:  | GRAS family transcription factor |
           chr3:18806472-18808100 REVERSE LENGTH=542
          Length = 542

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 149/377 (39%), Gaps = 43/377 (11%)

Query: 205 LRRMSQKVNPRGDSLERLASY----LSQDMTNHGDYLRGEASKNFGDALRVFHQGVPHRK 260
           L R+ + V+  GD ++R+  Y    LS   T         + ++F  + +  +   P+ K
Sbjct: 195 LIRIKESVSESGDPIQRVGYYFAEALSHKETESPSSSSSSSLEDFILSYKTLNDACPYSK 254

Query: 261 IADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWAPMIETIAKFHKSLKLTSIRLDE-ES 319
            A   A  AILEA     + IHI+DF +  G QW+ +++ +A    S K T IR+    +
Sbjct: 255 FAHLTANQAILEAT-NQSNNIHIVDFGIFQGIQWSALLQALAT-RSSGKPTRIRISGIPA 312

Query: 320 PECVSTP-LNFEETRRQLYEHAKSCXXXXXXXXXXXXXXXXXIKKMKKKGGRREFLAFNC 378
           P    +P  +   T  +L + A                    +     +    E L  N 
Sbjct: 313 PSLGDSPGPSLIATGNRLRDFA--AILDLNFEFYPVLTPIQLLNGSSFRVDPDEVLVVNF 370

Query: 379 MVGLLDLSDARLVSPLQSTSTQVWRKREQAMEFLKVAEDLINTSDCKGIITSGDGDAFEK 438
           M+ L  L        L  T+T V          L++A  L        I+T G+   +E 
Sbjct: 371 MLELYKL--------LDETATTVGTA-------LRLARSL-----NPRIVTLGE---YEV 407

Query: 439 MKNNCDFRSFIEGHLVHYQAWLESIESHFTPRFSEERTAIE-VLFEAPCVSXXXXXXXXX 497
             N  +F + ++  L  Y A  ES+E +   R S+ER  +E VLF    +          
Sbjct: 408 SLNRVEFANRVKNSLRFYSAVFESLEPNLD-RDSKERLRVERVLFGRRIMDLVRSDDDNN 466

Query: 498 XXXXXXXXXXHQEQMMSL------EGCRLSNNILLEAREVL-NGSEGSYEARIEGQSGNV 550
                      +EQ   L      E  + SN  + +A+ +L N +  +  + +E + G  
Sbjct: 467 KPGTRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPG-F 525

Query: 551 LVLEWKGTQLLRLSTWK 567
           + L W    LL +S+W+
Sbjct: 526 ISLAWNNVPLLTVSSWR 542


>AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription factor
           family protein | chr2:255581-257344 REVERSE LENGTH=587
          Length = 587

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 178 NQVSLPHLMEAYVETKGKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTNHGDYL 237
           N V L H + A  E   +   +LAEA+++++      +  ++ ++A+Y ++ +      L
Sbjct: 217 NGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRL 276

Query: 238 ---RGEASKNFGDALRV-FHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQ 293
              + +      D L++ F++  P+ K A F A  AILEA  E    +H+IDF +  G Q
Sbjct: 277 SPPQNQIDHCLSDTLQMHFYETCPYLKFAHFTANQAILEAF-EGKKRVHVIDFSMNQGLQ 335

Query: 294 WAPMIETIA 302
           W  +++ +A
Sbjct: 336 WPALMQALA 344


>AT3G03450.1 | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279
           REVERSE LENGTH=547
          Length = 547

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 180 VSLPHLMEAYVETKGKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTN--HGDY- 236
           V L H + A  E   +   +LA+A+++R+      +  ++ ++A+Y +Q +    + DY 
Sbjct: 178 VRLVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYT 237

Query: 237 ----LRGEASKNFGDALRV-FHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHG 291
               +    + +F + L + F++  P+ K A F A  AILEAV      +H+ID  L  G
Sbjct: 238 AETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAV-TTARRVHVIDLGLNQG 296

Query: 292 AQWAPMIETIA 302
            QW  +++ +A
Sbjct: 297 MQWPALMQALA 307


>AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family
           transcription factor | chr3:22410496-22412367 REVERSE
           LENGTH=623
          Length = 623

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 248 ALRVFHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWAPMIETIA-KFHK 306
           A R F +  P  +  +F A   ILE+  E  D IHI+DF +G+G QWA +I+ +A K ++
Sbjct: 329 AYRAFSETSPFLQFVNFTANQTILESF-EGFDRIHIVDFDIGYGGQWASLIQELAGKRNR 387

Query: 307 SLKLTSIRLDE-ESPECVSTPLNFEETRRQLYEHA 340
           S    S+++    SP  VS       T   L   A
Sbjct: 388 SSSAPSLKITAFASPSTVSDEFELRFTEENLRSFA 422


>AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription factor
           family protein | chr1:5149414-5151015 FORWARD LENGTH=533
          Length = 533

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 178 NQVSLPHLMEAYVETKGKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTNHGDYL 237
           N V L H + A  E   K   ++AEA+++++      +  ++ ++A+Y ++ +      L
Sbjct: 165 NGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARRIYRL 224

Query: 238 RGEAS---KNFGDALRV-FHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQ 293
               S    +  D L++ F++  P+ K A F A  AILEA  +    +H+IDF +  G Q
Sbjct: 225 SPSQSPIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAF-QGKKRVHVIDFSMSQGLQ 283

Query: 294 WAPMIETIA 302
           W  +++ +A
Sbjct: 284 WPALMQALA 292


>AT5G48150.2 | Symbols: PAT1 | GRAS family transcription factor |
           chr5:19522497-19524053 REVERSE LENGTH=490
          Length = 490

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 14/124 (11%)

Query: 192 TKGKGQNSL--AEAILRRMSQKVNPRGDSLERLASYLSQ----DMTNHGDYLRGE----- 240
            K   +N L  A +++ ++ Q V+  G+ ++RL +YL +     + + G  +        
Sbjct: 127 AKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCP 186

Query: 241 --ASKNFGDALRVFHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWAPMI 298
             AS      + + ++  P+ K    +A  AI EA+ E+ + +HIIDF +G G+QW  +I
Sbjct: 187 EPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEE-NRVHIIDFQIGQGSQWVTLI 245

Query: 299 ETIA 302
           +  A
Sbjct: 246 QAFA 249


>AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor |
           chr5:19522497-19524053 REVERSE LENGTH=490
          Length = 490

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 14/124 (11%)

Query: 192 TKGKGQNSL--AEAILRRMSQKVNPRGDSLERLASYLSQ----DMTNHGDYLRGE----- 240
            K   +N L  A +++ ++ Q V+  G+ ++RL +YL +     + + G  +        
Sbjct: 127 AKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCP 186

Query: 241 --ASKNFGDALRVFHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWAPMI 298
             AS      + + ++  P+ K    +A  AI EA+ E+ + +HIIDF +G G+QW  +I
Sbjct: 187 EPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEE-NRVHIIDFQIGQGSQWVTLI 245

Query: 299 ETIA 302
           +  A
Sbjct: 246 QAFA 249


>AT1G07520.1 | Symbols:  | GRAS family transcription factor |
           chr1:2309718-2311805 REVERSE LENGTH=695
          Length = 695

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 15/176 (8%)

Query: 180 VSLPHLMEAYVETKGKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTNHGDYLRG 239
           V    L+    ++   G    A+ +LR++ ++ +P GD+ +RLA + +  +    +   G
Sbjct: 313 VDFRTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTG 372

Query: 240 EASKNFGDALR--------------VFHQGVPHRKIADFAAISAILEAVPEDCDGIHIID 285
              +++ D++               VF    P   +  F +   IL+A  +D   +HI+D
Sbjct: 373 TMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAA-KDASVLHIVD 431

Query: 286 FYLGHGAQWAPMIETIAKFHKSLKLTSIRLDEESPECVSTPLNFEETRRQLYEHAK 341
           F + +G QW   I+ ++K +  L+   I   E     +      ++T R+L E+ K
Sbjct: 432 FGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCK 487