Miyakogusa Predicted Gene

Lj0g3v0182039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0182039.1 CUFF.11583.1
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02160.1 | Symbols:  | Cox19 family protein (CHCH motif) | ch...   105   5e-24
AT1G02160.2 | Symbols:  | Cox19 family protein (CHCH motif) | ch...    79   9e-16

>AT1G02160.1 | Symbols:  | Cox19 family protein (CHCH motif) |
          chr1:410803-411383 FORWARD LENGTH=71
          Length = 71

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 65/71 (91%)

Query: 1  MASKDSSLPYPSAARISDSQCFPQYTASLKCLEEFHSDKSKCQEHFDVYKECKKKEREAR 60
          M++K ++  YPSAARISDS C+ QY+ASLKCLEEF SDKSKCQ+HFDVYKECKKKEREAR
Sbjct: 1  MSTKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKEREAR 60

Query: 61 LERNKTRSLFS 71
          LERNKTRSLFS
Sbjct: 61 LERNKTRSLFS 71


>AT1G02160.2 | Symbols:  | Cox19 family protein (CHCH motif) |
          chr1:410803-411361 FORWARD LENGTH=91
          Length = 91

 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 50/56 (89%)

Query: 1  MASKDSSLPYPSAARISDSQCFPQYTASLKCLEEFHSDKSKCQEHFDVYKECKKKE 56
          M++K ++  YPSAARISDS C+ QY+ASLKCLEEF SDKSKCQ+HFDVYKECKKKE
Sbjct: 1  MSTKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56