Miyakogusa Predicted Gene

Lj0g3v0182029.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0182029.1 Non Chatacterized Hit- tr|H3GQI8|H3GQI8_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,29.31,1e-18,DUF2348,Uncharacterised protein family UPF0405;
Hap2_elong,Histone acetylation protein 2; no descrip,CUFF.11584.1
         (254 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10090.1 | Symbols: ELP6 | elongator protein 6 | chr4:6305455...   266   9e-72

>AT4G10090.1 | Symbols: ELP6 | elongator protein 6 |
           chr4:6305455-6307286 FORWARD LENGTH=262
          Length = 262

 Score =  266 bits (680), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 135/259 (52%), Positives = 180/259 (69%), Gaps = 10/259 (3%)

Query: 5   RDSNLLDEALGLHNN---NNSLCGRFVLVEDCVDTSAAFVLHHIIKRSLSSH---PVVFL 58
           R  NLLD ALG        + L G+ +L+EDCV+TS +FVLH ++KR LSS+    ++FL
Sbjct: 3   RSLNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSSNSSDALIFL 62

Query: 59  AFSHPFSHYDRILRKLGCNLAAQRDNNRFFFIDMLMLQCPDEGKL--NHDGFAAVFEKIE 116
           AF+ PFSHYDRILRKLGCNLA  + NNR  F DMLM++C D  ++  N    A +F +I+
Sbjct: 63  AFARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLFREIQ 122

Query: 117 RVVKALHQDNMKFASIMIDDISFLEVAANGSSND-VLDFLHYCHTLTSEYGCAFIALDHK 175
             V+ L        ++M+DD+S LE+A  GS++D VLDFLHYCHTL+SE  C+ + L+H+
Sbjct: 123 ETVRKLQSVTSGNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVILNHE 182

Query: 176 DIYLNEESPAIILEMEYLADVLVKAEPLATGLAKDVHGQLMVLHKETQHQ-HGSSPFKIH 234
           DIY + E PA +L+M  LADV++KAEPLA+GLA DVHGQL VL+K   +   GSS  K+ 
Sbjct: 183 DIYASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSRNKLQ 242

Query: 235 NFHFKIKENSIECFYPGTK 253
           NF F+IKEN I+ FYPG +
Sbjct: 243 NFQFRIKENGIDYFYPGCR 261