Miyakogusa Predicted Gene

Lj0g3v0181809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181809.1 tr|G7JWW1|G7JWW1_MEDTR HGWP repeat containing
protein-like protein OS=Medicago truncatula
GN=MTR_5g0,46.43,0.00000000000004,Transposase_24,Transposase,
Ptta/En/Spm, plant,CUFF.11564.1
         (85 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    56   6e-09
AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    51   2e-07

>AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr3:11827752-11834262 REVERSE LENGTH=510
          Length = 510

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 24  LDRRPEGMPIEQWASFLTYRLKEETMKMSETNALNRQKQTIPHTLGTKTIARKRHELEIE 83
           L+ RPE +P +QW+  +  R  ++  KM E N  N++   +PH  G K+ +RKR E++I+
Sbjct: 284 LENRPEKVPEDQWSHLVHLRFTDKWRKMQERNTKNQKNHIMPHLCGRKSFSRKRDEIKIK 343

Query: 84  TG 85
           TG
Sbjct: 344 TG 345


>AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr1:14999762-15001868 REVERSE LENGTH=390
          Length = 390

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 24  LDRRPEGMPIEQWASFLTYRLKEETMKMSETNALNRQKQTIPHTLGTKTIARKRHELEIE 83
           L  RPE +P +QW+  +     ++  KM E N  N++   +PH  G K+ +RKR E++I+
Sbjct: 164 LQNRPEKVPEDQWSHLVHLIFTDKWRKMQERNTKNQKNHIMPHLCGRKSFSRKRDEIKIK 223

Query: 84  TG 85
           TG
Sbjct: 224 TG 225