Miyakogusa Predicted Gene

Lj0g3v0181719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181719.1 Non Chatacterized Hit- tr|C0HHI9|C0HHI9_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,34.92,1e-18,ZINC FINGER,
CCHC DOMAIN CONTAINING 11,NULL; POLY(A) POLYMERASE CID
(PAP)-RELATED,NULL; no descripti,CUFF.11581.1
         (319 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39740.1 | Symbols:  | Nucleotidyltransferase family protein ...   346   1e-95
AT3G45750.1 | Symbols:  | Nucleotidyltransferase family protein ...   133   1e-31
AT3G45760.1 | Symbols:  | Nucleotidyltransferase family protein ...   105   6e-23
AT3G45750.2 | Symbols:  | Nucleotidyltransferase family protein ...   102   3e-22
AT3G45760.2 | Symbols:  | Nucleotidyltransferase family protein ...    95   7e-20
AT2G45620.1 | Symbols:  | Nucleotidyltransferase family protein ...    89   3e-18
AT5G53770.1 | Symbols:  | Nucleotidyltransferase family protein ...    52   5e-07

>AT2G39740.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr2:16576250-16578704 FORWARD LENGTH=511
          Length = 511

 Score =  346 bits (888), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 209/279 (74%)

Query: 1   MSTRSMLDIVLHDILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNL 60
           MS    LD  L +IL+V+ P + D   R  +I+  R +++SVE LRGATV+P+GSFVSNL
Sbjct: 1   MSRNPFLDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNL 60

Query: 61  FTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIF 120
           FTRWGDLDIS++L +GS I   GK QKQ LLG L++AL+  G W  LQF+ HARVPIL  
Sbjct: 61  FTRWGDLDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKV 120

Query: 121 KSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFN 180
            S  Q +SCDISI+NL G++KS+ L WI  IDGRFRD+VL+VKEWAKAH IN+SKTGTFN
Sbjct: 121 VSGHQRISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFN 180

Query: 181 SYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNANINRIISD 240
           SYSLSLLVIFHFQTCVPAILPPL+ +YP + VD LTGVR  AE+ IA+   ANI R  S+
Sbjct: 181 SYSLSLLVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSE 240

Query: 241 KSRPINRKSLPELFVEFLRKFAQMDSWASELGICPYTGQ 279
           +++ +NR SL EL V F  KF+ ++  A E G+CP+TG+
Sbjct: 241 RAKSVNRSSLSELLVSFFAKFSDINVKAQEFGVCPFTGR 279


>AT3G45750.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16793855-16797380 REVERSE LENGTH=682
          Length = 682

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 122/205 (59%), Gaps = 12/205 (5%)

Query: 7   LDIVLHDILRVVTPLQEDWAIRFAIINDFRSIV-----ESVESLRGATVEPYGSFVSNLF 61
           LD VL+D+     P+  D+  R  ++ +  ++      +S ES     +E YGSFV +++
Sbjct: 43  LDKVLNDVYCSFRPVSADYNTRKELVKNLNTMALDIYGKSEES--SPVLEAYGSFVMDMY 100

Query: 62  TRWGDLDISIELSNGSHISSIGKNQKQRLL---GDLIKALKLKGGWINLQFISHARVPIL 118
           +   DLD+SI   NG+  S I + +K  +L      +++L+ +G   N++ I  A+VPI+
Sbjct: 101 SSQSDLDVSINFGNGT--SEIPREKKLEILKRFAKKLRSLQGEGQVKNVESIFSAKVPIV 158

Query: 119 IFKSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGT 178
            F  +  GV CD+S+ N  G++ S+++  I +IDGRF+ + L+VK WAKAH++N++   T
Sbjct: 159 KFSDQGTGVECDLSVENKDGILNSQIVRIISQIDGRFQKLCLLVKHWAKAHEVNSALHRT 218

Query: 179 FNSYSLSLLVIFHFQTCVPAILPPL 203
            NS S++LLV  H QT  P ILPP 
Sbjct: 219 LNSVSITLLVALHLQTQNPPILPPF 243


>AT3G45760.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16801996-16804759 REVERSE LENGTH=474
          Length = 474

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 12/196 (6%)

Query: 20  PLQEDWAIRFAIINDFRSIV-----ESVESLRGATVEPYGSFVSNLFTRWGDLDISIELS 74
           P+  D+  R  ++ +  ++      +S ES     +E YGSF  N F+   DLD+SI  S
Sbjct: 56  PVSADYNTRKELVKNLNAMAIDIFGKSEES--SPVLEAYGSFAMNTFSSQKDLDVSINFS 113

Query: 75  NGSHISSIGKNQKQRLLGDL---IKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDI 131
           +G+  S   + +K  +L      +++L+ +G   N+  I  ARVPI+ F  +  G+ CD+
Sbjct: 114 SGT--SEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECDL 171

Query: 132 SINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSLSLLVIFH 191
           ++ +  G++ S+++  I +ID RF+ + L++K WA+AH +NN+   T NS S+++LV  H
Sbjct: 172 TVESKDGILTSQIIRIISQIDDRFQKLCLLIKHWARAHGVNNASHNTLNSISITMLVAHH 231

Query: 192 FQTCVPAILPPLKDVY 207
            QT  P ILPP   ++
Sbjct: 232 LQTQSPPILPPFSTLF 247


>AT3G45750.2 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16793855-16796913 REVERSE LENGTH=614
          Length = 614

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 33/176 (18%)

Query: 59  NLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWI------------- 105
           ++++   DLD+SI   NG+  S I + +K  +L    K L+   G I             
Sbjct: 2   DMYSSQSDLDVSINFGNGT--SEIPREKKLEILKRFAKKLRSLQGKIFVPFFLLLSCMPI 59

Query: 106 ------------------NLQFISHARVPILIFKSRRQGVSCDISINNLQGVIKSKLLLW 147
                             N++ I  A+VPI+ F  +  GV CD+S+ N  G++ S+++  
Sbjct: 60  PLLFSIYTKNPNREGQVKNVESIFSAKVPIVKFSDQGTGVECDLSVENKDGILNSQIVRI 119

Query: 148 IDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYSLSLLVIFHFQTCVPAILPPL 203
           I +IDGRF+ + L+VK WAKAH++N++   T NS S++LLV  H QT  P ILPP 
Sbjct: 120 ISQIDGRFQKLCLLVKHWAKAHEVNSALHRTLNSVSITLLVALHLQTQNPPILPPF 175


>AT3G45760.2 | Symbols:  | Nucleotidyltransferase family protein |
           chr3:16802253-16804759 REVERSE LENGTH=447
          Length = 447

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 112/211 (53%), Gaps = 27/211 (12%)

Query: 20  PLQEDWAIRFAIINDFRSIV-----ESVESLRGATVEPYGSFVSNLFTRWGDLDISIELS 74
           P+  D+  R  ++ +  ++      +S ES     +E YGSF  N F+   DLD+SI  S
Sbjct: 56  PVSADYNTRKELVKNLNAMAIDIFGKSEES--SPVLEAYGSFAMNTFSSQKDLDVSINFS 113

Query: 75  NGSHISSIGKNQKQRLLGDL---IKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDI 131
           +G+  S   + +K  +L      +++L+ +G   N+  I  ARVPI+ F  +  G+ CD+
Sbjct: 114 SGT--SEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECDL 171

Query: 132 SINNLQGVIKSKLLLWIDRIDGRFRDMVLV---------------VKEWAKAHKINNSKT 176
           ++ +  G++ S+++  I +ID RF+ + L+               +K WA+AH +NN+  
Sbjct: 172 TVESKDGILTSQIIRIISQIDDRFQKLCLLHCQLFSTNVNIVICQIKHWARAHGVNNASH 231

Query: 177 GTFNSYSLSLLVIFHFQTCVPAILPPLKDVY 207
            T NS S+++LV  H QT  P ILPP   ++
Sbjct: 232 NTLNSISITMLVAHHLQTQSPPILPPFSTLF 262


>AT2G45620.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr2:18792943-18795750 FORWARD LENGTH=764
          Length = 764

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 20/234 (8%)

Query: 53  YGSFVSNLFTRWGDLDISIELSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISH 112
           YGS  ++      D+D+ + +        I K++    L +++++  L+    N+Q ++ 
Sbjct: 478 YGSCANSFGFPKSDIDVCLAIEG----DDINKSEMLLKLAEILESDNLQ----NVQALTR 529

Query: 113 ARVPILIFKSRRQGVSCDISINNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKIN 172
           ARVPI+       G+SCDI INN+  V+ +KLL    +ID R R +  +VK WAK+ ++N
Sbjct: 530 ARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDYAQIDVRLRQLAFIVKHWAKSRRVN 589

Query: 173 NSKTGTFNSYSLSLLVIFHFQTCVPAILPPLKDVYPGNMVDKLTGVRADAEDFIAETCNA 232
            +  GT +SY+  L+ I   Q   P ILP L+++ P         VR D    I  T   
Sbjct: 590 ETYQGTLSSYAYVLMCIHFLQQRRPPILPCLQEMEP------TYSVRVDN---IRCTYFD 640

Query: 233 NINRIISDKSRPINRKSLPELFVEFLRKFAQMDSWASELGICPYTGQILFSLEQ 286
           N++R+ +  S   NR+++ EL   F   +A    +A  + +   TG IL   E+
Sbjct: 641 NVDRLRNFGSN--NRETIAELVWGFFNYWAYAHDYAYNV-VSVRTGSILGKREK 691


>AT5G53770.1 | Symbols:  | Nucleotidyltransferase family protein |
           chr5:21826733-21829858 FORWARD LENGTH=530
          Length = 530

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 13  DILRVVTPLQEDWAIRFAIINDFRSIVESVESLRGATVEPYGSFVSNLFTRWGDLDISIE 72
           D    + P Q + A R A +    S+++ +       VE +GS+ + L+    D+D+ I 
Sbjct: 127 DFCDFLLPTQAEKAERDAAVESVSSVIKYI--WPSCKVEVFGSYKTGLYLPTSDIDVVIL 184

Query: 73  LSNGSHISSIGKNQKQRLLGDLIKALKLKGGWINLQFISHARVPILIFKSRRQGVSCDIS 132
            S        G    Q  L  L +AL  +G   NL  I+ ARVPI+ F  ++  ++ D+S
Sbjct: 185 ES--------GLTNPQLGLRALSRALSQRGIAKNLLVIAKARVPIIKFVEKKSNIAFDLS 236

Query: 133 INNLQGVIKSKLLLWIDRIDGRFRDMVLVVKEWAKAHKINNSKTGTFNSYS-LSLLVIF 190
            +   G   ++ +          R + L++K + +  ++N   +G   SY+ L++L+ F
Sbjct: 237 FDMENGPKAAEFIQDAVSKLPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLIAF 295