Miyakogusa Predicted Gene

Lj0g3v0181699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181699.1 Non Chatacterized Hit- tr|K4C5K6|K4C5K6_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.93,0.000000000000006,seg,NULL,CUFF.11550.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 an...    68   4e-12
AT2G40400.2 | Symbols:  | Protein of unknown function (DUF399 an...    60   7e-10
AT2G40400.1 | Symbols:  | Protein of unknown function (DUF399 an...    60   7e-10

>AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr3:20829407-20832669 FORWARD LENGTH=745
          Length = 745

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 34/36 (94%)

Query: 152 TSRIYDATAIGEPLAIGKEKGKVWEKLMNSRVVYWG 187
           TSRIYDATAIGEP+A+GK+K KVWEKL+N+RVVY G
Sbjct: 130 TSRIYDATAIGEPMAMGKDKKKVWEKLLNARVVYLG 165


>AT2G40400.2 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
          Length = 735

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 33/36 (91%)

Query: 152 TSRIYDATAIGEPLAIGKEKGKVWEKLMNSRVVYWG 187
           TSRIYDA+ +GEP+A+GK+K +VWEKL+N+R+VY G
Sbjct: 121 TSRIYDASVLGEPMAVGKDKKRVWEKLLNARIVYLG 156


>AT2G40400.1 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
          Length = 735

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 33/36 (91%)

Query: 152 TSRIYDATAIGEPLAIGKEKGKVWEKLMNSRVVYWG 187
           TSRIYDA+ +GEP+A+GK+K +VWEKL+N+R+VY G
Sbjct: 121 TSRIYDASVLGEPMAVGKDKKRVWEKLLNARIVYLG 156