Miyakogusa Predicted Gene

Lj0g3v0181669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181669.1 Non Chatacterized Hit- tr|K4CG05|K4CG05_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,25.2,9e-19,B3
DNA binding domain,B3 DNA binding domain; no description,DNA-binding
pseudobarrel domain; DNA-bin,CUFF.11549.1
         (341 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   142   3e-34
AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    85   7e-17
AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    83   3e-16
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    77   2e-14
AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    75   7e-14
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    67   1e-11
AT5G09780.1 | Symbols:  | Transcriptional factor B3 family prote...    51   1e-06

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 46/339 (13%)

Query: 14  LFFKIITTTSIEAGELRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTDGDVWFQNG 73
            F K+I +++I+   LR+P+ F  ++  ++S  + L  PDG  W++   K D  +WFQ+G
Sbjct: 5   FFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDG 64

Query: 74  WKDFAKYYSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYPSHENQDEEHNP-------D 126
           W++F   YS+  G++++F Y+ +S F V+IF+ S  EI Y S    D  HN        +
Sbjct: 65  WQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFE 124

Query: 127 QIDDDSVEIL-----------DKIPPCKK--------------TKLKSPMSCPK-PRKKL 160
            ++D+  E++           +   P  K               K + P   PK P+K+ 
Sbjct: 125 DLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRG 184

Query: 161 RTSTSEDVGE----RPELHNLPKQVKIEDDVSGNTECLEREDLTSKITEALNRARTFQSK 216
           R   + D  E     P   +   + K  +  S     +  E+       A+N A+TF+  
Sbjct: 185 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEER----ERAINAAKTFEPT 240

Query: 217 IPSFMTVMKPAYV-DGYSLHISSLFAKKYLKNATDVLLQVLDGRTWSVS--FNLG--KFN 271
            P F  V++P+Y+  G  +++ S FA+KYL   +  +   L  + W V   +  G  KF+
Sbjct: 241 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGRAKFS 300

Query: 272 AGWKKFASVNNLKVGDVCLFELNKSVPHSLKVLIFPLAE 310
            GW +F   NNL  GDVC+FEL ++    LKV  F + E
Sbjct: 301 QGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339


>AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:685791-686668 FORWARD LENGTH=190
          Length = 190

 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 15  FFKIITTTSIEAGELRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTDGDVWFQNGW 74
           FFK++  ++++   +RIP  F K  G  +S  + L  P G +  I   +   ++WF  GW
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGW 89

Query: 75  KDFAKYYSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVE 134
            +FA+ +S++ GH +LFEYK +S F V IF+ S  E  YP     D  H  D  DDD +E
Sbjct: 90  SEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP----LDAVHIIDS-DDDVIE 144

Query: 135 ILDK 138
           I  K
Sbjct: 145 ITGK 148


>AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6542618-6543568 FORWARD LENGTH=209
          Length = 209

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 4   RNMPNNHSPIL-FFKIITTTSIEAGELRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHS 62
           R+  +  SP+  FFK++  ++++   ++IP  F K  G  +S  + L+ P G +  I   
Sbjct: 18  RSQQDPESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLK 77

Query: 63  KTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYP 114
           +   ++WF  GW +FA+ +S++ GH +LFEYK++S F V IF+ S  E +YP
Sbjct: 78  RIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 138/328 (42%), Gaps = 68/328 (20%)

Query: 29  LRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTD-GDVWFQNGWKDFAKYYSLDHGH 87
           L IP  F+      +   + LK P G  + +   + D   + F+ GW  F K +SL+   
Sbjct: 37  LVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEEND 96

Query: 88  MVLFEYKDSSHFGVHIFDKSTL---------------EIRYPSHEN-QDEEHNPDQIDDD 131
           +++F++   S F V +FD  TL               E    SH   + EEH    ID  
Sbjct: 97  LLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAEKTKASHTGYEQEEHINSDIDTA 156

Query: 132 SVEILDKIPPCKKTKL---KSPMSCPKPRKKLRTSTSEDVGERPELHNLPKQVKIEDDVS 188
           S + L  I P    ++   K P+S     KK+R   S D        NL ++  +E   +
Sbjct: 157 SAQ-LPVISPTSTVRVSEGKYPLS---GFKKMRRELSND--------NLDQKADVEMISA 204

Query: 189 GNTECLEREDLTSKITEALNRARTFQSKIPSFMTVMKPAYVDGYSLHISSLF-------- 240
           G+ +            +AL+ A+   S    F+  MK ++V      +S  F        
Sbjct: 205 GSNK------------KALSLAKRAISP-DGFLVFMKRSHV------VSKCFLTIPYKWC 245

Query: 241 AKKYLKNATDVLLQVLDGRTWSVSFNL------GKFNAGWKKFASVNNLKVGDVCLFEL- 293
            K  L    +V++QV D   W + FN+      G  + GWKKF   NNL+ GDVC+FE  
Sbjct: 246 VKNMLITRQEVVMQV-DQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPA 304

Query: 294 -NKSVPHSLKVLIFPLAEKLHSPSQSPV 320
            +++ P  L V IF   E   + +  PV
Sbjct: 305 NSETKPLHLNVYIFRGEETERTNNVDPV 332


>AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr1:18312983-18313748 FORWARD LENGTH=190
          Length = 190

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 15  FFKIITTTSIEAGELRIPNNFTKRYGGDMSNPMFLKPPDGTEWQICHSKTDGDVWFQNGW 74
           F KII  + I    +++P  F  R+G  +++ + L+ P G +  I   +   +VWF+ GW
Sbjct: 34  FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGW 92

Query: 75  KDFAKYYSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDD 131
            +FA+ +SL  GH + F Y+  S F V IFD S  EI YP  +  D  +  + +DDD
Sbjct: 93  SEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDD--NREEVMDDD 147


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 206 ALNRARTFQSKIPSFMTVMKPAYV-DGYSLHISSLFAKKYLKNATDVLLQVLDGRTWSVS 264
           A+N A+TF+   P F  V++P+Y+  G  +++ S FA+KYL   +  +   L  + W V 
Sbjct: 115 AVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVR 174

Query: 265 --FNLG--KFNAGWKKFASVNNLKVGDVCLFELNKSVPHSLKVLIFPLAE 310
             +  G  KF+ GW +F   NN+  GDVC+FEL ++    L+V  F + E
Sbjct: 175 CLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRVNE 224


>AT5G09780.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr5:3036956-3038484 REVERSE LENGTH=308
          Length = 308

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 114/291 (39%), Gaps = 26/291 (8%)

Query: 15  FFKIITTTSIEAGELR-IPNNFTKRYG-GDMSNPMFLKPPDGTEWQICHSKTDGDVWFQ- 71
           FFK++  + + + + R IP +F   +   ++S  M  +   G  W++  SK     + + 
Sbjct: 19  FFKVLKRSDMSSEDTRAIPYDFVINFSDNELSGDMKFRVQWGNSWKVKISKNPRFYFMEK 78

Query: 72  NGWKDFAKYYSLDHGHMVLFEYKDSSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDD 131
           +GW+ F    +L     + F +K    F V IF+K   E+  P         +     + 
Sbjct: 79  SGWEKFVIDNALGDHEFLTFTHKGQMSFTVKIFNKDGKEMMQPPQSRASFASSSRVKTEQ 138

Query: 132 SVEILDKIPPCKKTKLKSPMSCPKPRKKLRTSTSEDVGERPELHNLPKQVKIEDDVSGNT 191
            V+  +++     ++ + P +  +  +          G      N  K+   E      T
Sbjct: 139 DVKREEEVLVSSDSRSRGPTTAAETNRG---------GSYKRKLNFGKKKAEETQTYKRT 189

Query: 192 ECLEREDLTSKITEALNRARTF----QSKIPSFMTVMKPAYVDGYSLHISSLFAKKYLKN 247
           E  +    T ++   +++ R +     S +  F   +  +Y+   SL I   F     K 
Sbjct: 190 ERTQNSKRTERV---VSKERVYAGEPSSSVAGFKIFISKSYIK--SLAIPKPFGNYMPKE 244

Query: 248 ATDVLLQVLDG-RTWSVSFNLGK----FNAGWKKFASVNNLKVGDVCLFEL 293
            T V +   DG +TW V F + +    F+ GWK+      +  GD C F L
Sbjct: 245 KTRVKIHHPDGEKTWKVVFVVKERGQIFSGGWKRLCKEYPVVFGDTCKFTL 295