Miyakogusa Predicted Gene

Lj0g3v0181179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181179.1 Non Chatacterized Hit- tr|Q8RX24|Q8RX24_ARATH
Putative uncharacterized protein At4g02480
OS=Arabidop,41.07,0.00000004, ,CUFF.11509.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02480.1 | Symbols:  | AAA-type ATPase family protein | chr4:...    62   7e-11
AT1G62130.1 | Symbols:  | AAA-type ATPase family protein | chr1:...    51   2e-07
AT4G24860.1 | Symbols:  | P-loop containing nucleoside triphosph...    49   8e-07

>AT4G02480.1 | Symbols:  | AAA-type ATPase family protein |
           chr4:1082082-1088680 REVERSE LENGTH=1265
          Length = 1265

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 9/112 (8%)

Query: 1   MLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKPCSFSKQSPTATDIGRSI 60
           MLAKALAK FGAKL+I DS LL GG  ++EAE  K+G   E+    +K++  A  + +  
Sbjct: 517 MLAKALAKQFGAKLMIVDSLLLPGGSPAREAESSKEGSRRERLSMLAKRAVQAAQVLQHK 576

Query: 61  DPSAS-ETDTPSSSNAPTPCGLESQPKLETDNAPSTSGTTKTGFKLGDRVKY 111
            P++S + D    S   +    ++ PK E   A S S T    FK GDRVK+
Sbjct: 577 KPTSSVDADITGGSTLSS----QALPKQEVSTATSKSYT----FKAGDRVKF 620


>AT1G62130.1 | Symbols:  | AAA-type ATPase family protein |
           chr1:22962365-22968920 REVERSE LENGTH=1043
          Length = 1043

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 36/119 (30%)

Query: 1   MLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKPCSFSKQSPTATDIGRSI 60
           +LAKALA  F AKLLIFDS+ +LG +++KE E L +G             P   D G+S+
Sbjct: 372 ILAKALANSFNAKLLIFDSNPILGVMTAKEFESLMNG-------------PALIDRGKSL 418

Query: 61  DPSASETDTPSSSNAPTPCGLESQPKLETDNAPSTSGTTKTGFKL--------GDRVKY 111
           D S+ + D    S+ P+P             +P + GT  +G  +        GDRV++
Sbjct: 419 DLSSGQGD----SSIPSPA-----------TSPRSFGTPISGLLILHWGKTLAGDRVRF 462


>AT4G24860.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:12801580-12808190
           REVERSE LENGTH=1122
          Length = 1122

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 23/86 (26%)

Query: 2   LAKALAKYFGAKLLIFDSHLLLG-----------------------GLSSKEAELLKDGL 38
           LAKALA+   AKLLIFDS+ +LG                        L++KE E L+DGL
Sbjct: 363 LAKALARDLEAKLLIFDSYPILGFTRGKFLHLHLFVYFPDYGYEITALTAKEVESLRDGL 422

Query: 39  NAEKPCSFSKQSPTATDIGRSIDPSA 64
            + K C    QS    D G+S D SA
Sbjct: 423 ASNKSCKLPNQSIELIDQGKSSDLSA 448