Miyakogusa Predicted Gene

Lj0g3v0181109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0181109.1 tr|B9MTC1|B9MTC1_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_916069
PE=3,53.85,9e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; DUF588,Uncharacterised protein family UPF,CUFF.11506.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28370.1 | Symbols:  | Uncharacterised protein family (UPF049...   214   3e-56
AT2G37200.1 | Symbols:  | Uncharacterised protein family (UPF049...   189   1e-48
AT3G53850.1 | Symbols:  | Uncharacterised protein family (UPF049...   117   6e-27
AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF049...   114   4e-26
AT5G02060.1 | Symbols:  | Uncharacterised protein family (UPF049...   104   3e-23
AT3G50810.1 | Symbols:  | Uncharacterised protein family (UPF049...    78   4e-15
AT4G37235.1 | Symbols:  | Uncharacterised protein family (UPF049...    68   3e-12
AT1G49405.1 | Symbols:  | Uncharacterised protein family (UPF049...    61   4e-10

>AT2G28370.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr2:12132092-12133447 FORWARD LENGTH=179
          Length = 179

 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 141/185 (76%), Gaps = 9/185 (4%)

Query: 1   MSMVRPSVHPVEAPPL--TDHATPIHT-MKDIQGMPGTXXXXXXXXXXXXRFLQFSFALV 57
           M++   SVHPVE PP   T+   P    M D++GMPGT            RF QF FA  
Sbjct: 1   MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLAL------RFFQFLFAAA 54

Query: 58  SLSVMATTSDFPSVTAFRYLVAAVSLQSLWSLSLAIADIYAILVRRGFRNPRIVSLFSVG 117
           +L VMA+TSDFPSVTAF YLVAA  LQSLWSL+LA+ D+YAI+V+R  +N R+VSLF++G
Sbjct: 55  ALCVMASTSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIG 114

Query: 118 DGITSTLTFSAACASAGITVLIGNDLNECAQNHCSRFETATAMAFMSWFAASPSFILNFW 177
           DG+TSTLTF+AACASAGITVLI NDLN CAQNHC +FET+TA+AF+SWFAA PSF+ NFW
Sbjct: 115 DGVTSTLTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFW 174

Query: 178 TLASK 182
           +LAS+
Sbjct: 175 SLASR 179


>AT2G37200.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr2:15622098-15623047 REVERSE LENGTH=180
          Length = 180

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 135/186 (72%), Gaps = 11/186 (5%)

Query: 1   MSMVRPSVHPVEAPPLTDHATPIHT----MKDIQGMPGTXXXXXXXXXXXXRFLQFSFAL 56
           M++ RP++HPV+A P+   A  I      MKD+QGMPGT            R  QF  AL
Sbjct: 2   MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLIL------RLSQFVPAL 55

Query: 57  VSLSVMATTSDFPSVTAFRYLVAAVSLQSLWSLSLAIADIYAILVRRGFRNPRIVSLFSV 116
           +S+SVM TTSDF S TAF  LV AVSLQSLWSLSL I D YA+LVRR  RN  +V  F++
Sbjct: 56  ISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRRSLRNHSVVQCFTI 115

Query: 117 GDGITSTLTFSAACASAGITVLIGNDLNECAQNHCSRFETATAMAFMSWFAASPSFILNF 176
           GDG+TSTLTF+AA ASAGITVLI NDL +C  NHC+RFETATAMAF+SWFA SPSFILNF
Sbjct: 116 GDGVTSTLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNF 174

Query: 177 WTLASK 182
           W+LA+ 
Sbjct: 175 WSLATH 180


>AT3G53850.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr3:19948262-19948994 REVERSE LENGTH=154
          Length = 154

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 9/159 (5%)

Query: 26  MKDIQGMPGTXXXXXXXXXXXXRFLQFSFALVSLSVMATTSDFPSVTAFRYLVAAVSLQS 85
           MK + G PGT            R  Q + A  S+ VM +  +F   TAF YL+A++ LQ 
Sbjct: 1   MKKLLGGPGTVCGLLL------RIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQL 54

Query: 86  LWSLSLAIADIYAILVRRGFRNPRIVSLFSVGDGITSTLTFSAACASAGITVLIGNDLNE 145
           LWS  LA  D+YA+  ++  +NP +VSLF VGD +T+ L+ +AAC+SAG+ VL   D+  
Sbjct: 55  LWSFGLACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKY 114

Query: 146 C---AQNHCSRFETATAMAFMSWFAASPSFILNFWTLAS 181
           C   +Q  C R+E A A++F++W   + S  + FW LAS
Sbjct: 115 CNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153


>AT3G23200.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr3:8281659-8282603 FORWARD LENGTH=152
          Length = 152

 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 7/157 (4%)

Query: 26  MKDIQGMPGTXXXXXXXXXXXXRFLQFSFALVSLSVMATTSDFPSVTAFRYLVAAVSLQS 85
           M DI G PGT            R  Q  FA  S+S M T+  F S TAF YL+AA+ LQ 
Sbjct: 1   MIDIPGTPGTLTGLVL------RISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQV 54

Query: 86  LWSLSLAIADIYAILVRRGFRNPRIVSLFSVGDGITSTLTFSAACASAGITVLIGNDLNE 145
           +WS  LAI D +A++ ++   +P +VSLF VGD +TSTL+ + A +SAGITVL   DL  
Sbjct: 55  IWSFGLAILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGS 114

Query: 146 CA-QNHCSRFETATAMAFMSWFAASPSFILNFWTLAS 181
           C+ +  C +++ + A+AF+ W   + S +   W LAS
Sbjct: 115 CSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151


>AT5G02060.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr5:404908-405774 FORWARD LENGTH=152
          Length = 152

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 26  MKDIQGMPGTXXXXXXXXXXXXRFLQFSFALVSLSVMATTSDFPSVTAFRYLVAAVSLQS 85
           MK + G PGT            R  Q + A  S+ VM ++ DF + TAF +LVA++ LQ 
Sbjct: 1   MKKMIGSPGTMSGLIL------RLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQL 54

Query: 86  LWSLSLAIADIYAILVRRGFRNPRIVSLFSVGDGITSTLTFSAACASAGITVLIGNDLNE 145
           +WS  LA  D+YAI  +   R+P ++SLF+VGD +T+ L  +AAC+SAG+TVL   D   
Sbjct: 55  IWSFGLACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEF 114

Query: 146 CAQN---HCSRFETATAMAFMSWFAASPSFILNFWTL 179
           C Q     C RF+ +  ++F +WF A+ S    FW L
Sbjct: 115 CRQQPALSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151


>AT3G50810.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr3:18889002-18889868 REVERSE LENGTH=154
          Length = 154

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 48  RFLQFSFALVSLSVMATTSDFPSVTAFRYLVAAVSLQSLWSLSLAIADIYAILVRRGFRN 107
           RF Q  F+  SL  M    DF   T F YL   +++ + WS+ LA+ D Y++LV+   + 
Sbjct: 17  RFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILLALTDTYSVLVKLLPQE 76

Query: 108 PRIVSLFSVGDGITSTLTFSAACASAGITVLIGN-DLNECAQNHCSRFETATAMAFMSWF 166
            R++S+   GD + S L+   ACA A  T L+ + D   C  + C +++ + A+AF+ WF
Sbjct: 77  LRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSLCIQYQVSAALAFLCWF 136

Query: 167 AASPSFILNFWTLAS 181
               S + NFW+L S
Sbjct: 137 LLLASALFNFWSLPS 151


>AT4G37235.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr4:17518052-17519671 FORWARD LENGTH=152
          Length = 152

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 67  DFPSVTAFRYLVAAVSLQSLWSLSLAIADIYAILVRRGFRNPRIVSLFSVGDGITSTLTF 126
           DF + T F YLV  + L + WS++LA+ + Y+ILV++      ++S+   GD + S L+ 
Sbjct: 38  DFYAYTTFCYLVTVMGLVTPWSVTLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLSL 97

Query: 127 SAACASAGITVLIGNDLNECAQNHCSRFETATAMAFMSWFAASPSFILNFWTLAS 181
             AC++A + VL    L +  +  C R++ +  MAF+S F +  S   NF  L S
Sbjct: 98  GGACSTASVAVL----LMDAGEKQCDRYKLSATMAFLSSFLSFASTFFNFCLLPS 148


>AT1G49405.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr1:18284335-18284947 REVERSE LENGTH=152
          Length = 152

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 66/115 (57%)

Query: 48  RFLQFSFALVSLSVMATTSDFPSVTAFRYLVAAVSLQSLWSLSLAIADIYAILVRRGFRN 107
           R  Q   A  SL  M     F   TAF YLV  +SL   W+L+LA+ DIY +++++ F+ 
Sbjct: 17  RLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAMVDIYCVILQQPFQK 76

Query: 108 PRIVSLFSVGDGITSTLTFSAACASAGITVLIGNDLNECAQNHCSRFETATAMAF 162
           PRI+   S+GD + S L  ++A ++A +  ++ ++ + C    C+R++ A  +AF
Sbjct: 77  PRILLAISIGDWVVSVLALASASSAASVVDILRSNESSCPPTICNRYQFAATLAF 131