Miyakogusa Predicted Gene

Lj0g3v0180799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180799.1 tr|A7SCA4|A7SCA4_NEMVE Predicted protein
OS=Nematostella vectensis GN=v1g210064 PE=4
SV=1,48,6e-19,NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT,NULL;
ETC_C1_NDUFA5,ETC complex I subunit,CUFF.11494.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52840.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related...   270   4e-73
AT4G28005.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   102   9e-23

>AT5G52840.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related |
           chr5:21413718-21414794 FORWARD LENGTH=169
          Length = 169

 Score =  270 bits (690), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 142/164 (86%)

Query: 1   MFLRAVARPLMAKMKETTGIVGLDVVPNAREVLIGLYNKTLTEIQKVPEDEGYRKAVESF 60
           MFLRA+ RPL+AK+K+TTGIVGLDVVPNAR VLI LY+KTL EIQ VPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLISHMIEWDPWGVPDDYECEVI 120
           TR RL  C+EEEDWE IE RLGCGQVEELIEEA+DEL LI  MIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPHPLPKEFHDTLEALISKSGKDTPAVSSSD 164
           ENDAP+PKHVP HRP PLP++F+ TLE LI++S  + PA + SD
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSD 164


>AT4G28005.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: NADH-ubiquinone oxidoreductase-related
           (TAIR:AT5G52840.1); Has 37 Blast hits to 37 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi
           - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr4:13929655-13930191 REVERSE
           LENGTH=115
          Length = 115

 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 81/164 (49%), Gaps = 54/164 (32%)

Query: 1   MFLRAVARPLMAKMKETTGIVGLDVVPNAREVLIGLYNKTLTEIQKVPEDEGYRKAVESF 60
           MF R + RPL+AK+K+TTGIV                                       
Sbjct: 1   MFQRVIGRPLLAKVKQTTGIV--------------------------------------- 21

Query: 61  TRHRLKACQEEEDWEAIENRLGCGQVEELIEEAQDELKLISHMIEWDPWGVPDDYECEVI 120
                + C EEEDW  IE RL CG+VEELIEEA DEL L+  MI              +I
Sbjct: 22  -----EVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLI 68

Query: 121 ENDAPVPKHVPLHRPHPLPKEFHDTLEALISKSGKDTPAVSSSD 164
              AP+PKHVP HRP PLP+EF+ TL+A+ S+S  +  A SSSD
Sbjct: 69  --LAPIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSSD 110