Miyakogusa Predicted Gene

Lj0g3v0180459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180459.1 Non Chatacterized Hit- tr|D7TVG5|D7TVG5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.44,1e-17,seg,NULL,CUFF.11461.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64430.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   4e-11
AT1G64430.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   4e-11

>AT1G64430.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23933541-23936336 FORWARD
           LENGTH=559
          Length = 559

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 79  SDQFDRQLLQRIAVTAKDADEALQMIADNAAATSEGGVVSTSDCCSIISAALSRNNPQLA 138
           S   D +LL  ++   +DADEAL MI+D    ++ GG+V   DC SIISAA+SR N  LA
Sbjct: 68  SSILDDELLSSVSAV-RDADEALAMISDRFG-SNRGGIVELEDCRSIISAAVSRGNVDLA 125

Query: 139 LSVFYAMWISFHQG 152
           LS+FY M  SF  G
Sbjct: 126 LSIFYTMRASFDLG 139


>AT1G64430.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23933541-23936336 FORWARD
           LENGTH=559
          Length = 559

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 79  SDQFDRQLLQRIAVTAKDADEALQMIADNAAATSEGGVVSTSDCCSIISAALSRNNPQLA 138
           S   D +LL  ++   +DADEAL MI+D    ++ GG+V   DC SIISAA+SR N  LA
Sbjct: 68  SSILDDELLSSVSAV-RDADEALAMISDRFG-SNRGGIVELEDCRSIISAAVSRGNVDLA 125

Query: 139 LSVFYAMWISFHQG 152
           LS+FY M  SF  G
Sbjct: 126 LSIFYTMRASFDLG 139