Miyakogusa Predicted Gene

Lj0g3v0180079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0180079.1 tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38
kDa subunit OS=Zea mays PE=2 SV=1,54.5,1e-38,zf-CCCH,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type; seg,NULL; U2AUXFACTOR,U2
auxiliary f,CUFF.11429.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   131   1e-31
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   131   2e-31
AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   127   2e-30
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   127   2e-30
AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    47   5e-06

>AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615302-9616042 FORWARD
           LENGTH=246
          Length = 246

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 67/77 (87%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYVQF+EED+         GRFYSGRPIIA+FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 58  MIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGY 117

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVKL+ R+LRRKL
Sbjct: 118 CNFMHVKLVSRELRRKL 134


>AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615152-9616042 FORWARD
           LENGTH=296
          Length = 296

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 67/77 (87%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYVQF+EED+         GRFYSGRPIIA+FSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVKL+ R+LRRKL
Sbjct: 168 CNFMHVKLVSRELRRKL 184


>AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFYSGRPIIA+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK I R+LRRKL
Sbjct: 168 CNFMHVKQISRELRRKL 184


>AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 64/77 (83%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEENSCNRGGY 60
           MIGNVYV F+EED          GRFYSGRPIIA+FSPVTDFREATCRQYEENSCNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGY 167

Query: 61  CNFMHVKLIGRDLRRKL 77
           CNFMHVK I R+LRRKL
Sbjct: 168 CNFMHVKQISRELRRKL 184


>AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:3384164-3388373 REVERSE LENGTH=757
          Length = 757

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 1   MIGNVYVQFREEDEXXXXXXXXHGRFYSGRPIIAEFSPVTDFREATCRQYEEN---SCNR 57
           + GNVYV +R  +         +GR+++G+ +  EF  ++ ++ A C +Y ++   +C+R
Sbjct: 334 LKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSR 393

Query: 58  GGYCNFMH 65
           G  CNF+H
Sbjct: 394 GSACNFIH 401