Miyakogusa Predicted Gene
- Lj0g3v0180009.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0180009.1 Non Chatacterized Hit- tr|I1H2U9|I1H2U9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,45.65,4e-19,TRANSCRIPTION FACTOR X1-LIKE,NULL; RIBONUCLEASE P
PROTEIN SUBUNIT P38-RELATED,NULL; XH,Uncharacteris,CUFF.11421.1
(107 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15910.1 | Symbols: | XH/XS domain-containing protein | chr1... 90 4e-19
AT4G00380.1 | Symbols: | XH/XS domain-containing protein | chr4... 89 5e-19
AT1G80790.1 | Symbols: | XH/XS domain-containing protein | chr1... 87 3e-18
AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr1... 84 3e-17
AT3G12550.2 | Symbols: | XH/XS domain-containing protein | chr3... 74 2e-14
AT3G12550.1 | Symbols: | XH/XS domain-containing protein | chr3... 74 2e-14
AT3G29375.2 | Symbols: | XH domain-containing protein | chr3:11... 69 5e-13
AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 69 7e-13
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 69 7e-13
AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:11... 68 2e-12
AT5G59390.1 | Symbols: | XH/XS domain-containing protein | chr5... 56 4e-09
AT4G01780.1 | Symbols: | XH/XS domain-containing protein | chr4... 50 3e-07
AT4G01180.1 | Symbols: | XH/XS domain-containing protein | chr4... 49 1e-06
>AT1G15910.1 | Symbols: | XH/XS domain-containing protein |
chr1:5465951-5468723 FORWARD LENGTH=634
Length = 634
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 60/94 (63%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+LE +E++NS L+ KE Q EI ARK+ + L + + +G+KRMGELD KPF
Sbjct: 456 ELEGLESMNSVLMTKERQSNDEIQAARKKLIAGLTGLLGAETDIGVKRMGELDEKPFLDV 515
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFK 96
C +YS + +A LCS+W+ENLK+ +W PFK
Sbjct: 516 CKLRYSANEAAVEAATLCSTWQENLKNPSWQPFK 549
>AT4G00380.1 | Symbols: | XH/XS domain-containing protein |
chr4:167959-170448 FORWARD LENGTH=635
Length = 635
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+LE +E++NS L+ KE Q EI AR++ + L + S +G+KRMGELD KPF
Sbjct: 457 ELEDLESMNSVLMTKERQSNDEIQAARQKMIAGLTGLLGAESDIGVKRMGELDEKPFLDV 516
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFK 96
C +YS + + +A LCS+W+ENLK+ +W PFK
Sbjct: 517 CKLRYSANEARVEAATLCSTWKENLKNPSWQPFK 550
>AT1G80790.1 | Symbols: | XH/XS domain-containing protein |
chr1:30360280-30362856 FORWARD LENGTH=634
Length = 634
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+L+ +E+ NS+L+VKE + EI++ARK + L+++ R+ + +KRMGEL+ KPF T
Sbjct: 455 ELQDLEDTNSALMVKERKSNDEIVEARKFLITELRELVSDRNIIRVKRMGELEEKPFMTA 514
Query: 63 CSQKYSCEQWQDIS-AKLCSSWEENLKDSAWHPFKTI 98
C Q+ + E+ + A LCS W+E +KDSAW PFK +
Sbjct: 515 CRQRCTVEEEAQVQYAMLCSKWQEKVKDSAWQPFKHV 551
>AT1G13790.1 | Symbols: | XH/XS domain-containing protein |
chr1:4727438-4730229 FORWARD LENGTH=736
Length = 736
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 8 ENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKY 67
E+L +LVVK E+ DARK + S++++ R+ +G+KRMG LD PF+ +KY
Sbjct: 562 ESLYQTLVVKHGYTNDELQDARKALIRSMRELTT-RAYIGVKRMGALDETPFKKVAKEKY 620
Query: 68 SCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQ 105
+ + +LCS WEE+L DSAWHP K +E +GI +
Sbjct: 621 PAVEADKKAEELCSLWEEHLGDSAWHPIKVVEKDGIAK 658
>AT3G12550.2 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+L + N LVV+E + E+ +AR+ + +L+DM +G+KRMGELD KPF
Sbjct: 461 ELAHLNQFNQDLVVQERKSNDELQEARRALISNLRDMG---LHIGVKRMGELDTKPFMKA 517
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEV 100
KY E +D + ++ WEE LKD WHPFK I++
Sbjct: 518 MRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKL 555
>AT3G12550.1 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+L + N LVV+E + E+ +AR+ + +L+DM +G+KRMGELD KPF
Sbjct: 461 ELAHLNQFNQDLVVQERKSNDELQEARRALISNLRDMG---LHIGVKRMGELDTKPFMKA 517
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEV 100
KY E +D + ++ WEE LKD WHPFK I++
Sbjct: 518 MRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKL 555
>AT3G29375.2 | Symbols: | XH domain-containing protein |
chr3:11280882-11281573 FORWARD LENGTH=176
Length = 176
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+LE E L ++L+VKE EIL+A+K + ++D+ R+ + +KRMG LD +PF
Sbjct: 54 ELEQREGLINALLVKERYANDEILEAQKLLISQMRDLTDDRTTIRVKRMGHLDVEPFVKA 113
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQV 106
++ + ++ + WEENL+D W PFK +E I +V
Sbjct: 114 SKRRLTGN-----DTEVYAEWEENLRDPHWQPFKRVETGNIVKV 152
>AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
QL ++ N +L+++E + E+ +A KE ++ +K+ + +G+KRMGEL KPF
Sbjct: 468 QLADLDKFNQTLILRERRTNDELQEAHKELVNIMKEW---NTNIGVKRMGELVTKPFVDA 524
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEV 100
QKY + +D + ++ WE LKDS WHPFK +++
Sbjct: 525 MQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFKRVKL 562
>AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
QL ++ N +L+++E + E+ +A KE ++ +K+ + +G+KRMGEL KPF
Sbjct: 468 QLADLDKFNQTLILRERRTNDELQEAHKELVNIMKEW---NTNIGVKRMGELVTKPFVDA 524
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEV 100
QKY + +D + ++ WE LKDS WHPFK +++
Sbjct: 525 MQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFKRVKL 562
>AT3G29375.1 | Symbols: | XH domain-containing protein |
chr3:11280151-11281829 FORWARD LENGTH=355
Length = 355
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 3 QLELVENLNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTF 62
+LE E L ++L+VKE EIL+A+K + ++D+ R+ + +KRMG LD +PF
Sbjct: 177 ELEQREGLINALLVKERYANDEILEAQKLLISQMRDLTDDRTTIRVKRMGHLDVEPFVKA 236
Query: 63 CSQKYSCEQWQDISAKLCSSWEENLKDSAWHPFKTIEVNGI 103
++ + ++ + WEENL+D W PFK +E I
Sbjct: 237 SKRRLTGND-----TEVYAEWEENLRDPHWQPFKRVETGNI 272
>AT5G59390.1 | Symbols: | XH/XS domain-containing protein |
chr5:23954934-23957151 FORWARD LENGTH=561
Length = 561
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 13 SLVVKEHQYKQEILDARKESLD--SLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKYSCE 70
+L KE E D KE + + + + ++ +KRMG+L+P PF +K+
Sbjct: 382 TLARKERATNDEYQDVLKEMIQVWNANEELMKQEKIRVKRMGQLNPAPFLPAVMKKHKVT 441
Query: 71 Q--WQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQ 105
Q ++ + KLCS WE N+ D W PF+ E +G P+
Sbjct: 442 QSKAENKAMKLCSVWEANIGDVQWTPFRVDESDGTPK 478
>AT4G01780.1 | Symbols: | XH/XS domain-containing protein |
chr4:767310-769246 FORWARD LENGTH=472
Length = 472
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 10 LNSSLVVKEHQYKQEILDARKESLDSLKDMFRGRSQLGIKRMGELDPKPFQTFCSQKYSC 69
N +L+++E + E+ +ARKE ++ MGEL KPF QKY
Sbjct: 312 FNQTLILRERRTNDELQEARKELVNC---------------MGELVRKPFVDAMQQKYCQ 356
Query: 70 EQWQDISAKLCSSWEENLKDSAWHPFKTIEV 100
E +D + ++ WE + D WHP+K +++
Sbjct: 357 EDVEDRAVEVLQLWEHYINDPDWHPYKRVKL 387
>AT4G01180.1 | Symbols: | XH/XS domain-containing protein |
chr4:501287-503394 REVERSE LENGTH=554
Length = 554
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 13 SLVVKEHQYKQEILDARKESLDSLK--DMFRGRSQLGIKRMGELDPKPFQTFCSQKYSCE 70
+L KE E DARKE + K + + ++ +K MGEL+P PF K+
Sbjct: 372 TLARKERATNDEYQDARKEMIKVWKANEELMKQEKIRVKIMGELNPAPFLPAVMNKHK-- 429
Query: 71 QWQDISAKLCSSWEENLKDSAWHPFKTIEVNGIPQ 105
+ LCS W + D W PF+ E +G P+
Sbjct: 430 -----AMMLCSVWAAEIGDVQWTPFRVDESDGTPK 459