Miyakogusa Predicted Gene

Lj0g3v0178939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0178939.1 tr|A9SJQ1|A9SJQ1_PHYPA Class II RPD3 type histone
deacetylase protein OS=Physcomitrella patens subsp,55,1e-18,no
description,Histone deacetylase domain; SUBFAMILY NOT NAMED,NULL;
HISTONE DEACETYLASE,Histone
dea,NODE_39709_length_327_cov_88.611618.path3.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |...   125   7e-30

>AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |
           chr4:16102774-16105439 REVERSE LENGTH=423
          Length = 423

 Score =  125 bits (314), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 83/105 (79%), Gaps = 2/105 (1%)

Query: 23  FFCRKSQRVVNRCSFRI-SNSSLPSIEQLSDARVIYSVAPSMGHNQDSHPESHFRVPSIV 81
           +  + S   +N CSF    N  LPSI+QL+DAR+IYSV+ ++GHN++SHPE   RVP+IV
Sbjct: 33  YLLKPSGSSIN-CSFSTEKNPLLPSIQQLADARLIYSVSAALGHNKESHPECSARVPAIV 91

Query: 82  NALEEMKLTPKFRGSEIIELQHFEPASVDDIASVHARAYVFGLEK 126
           NALE  +LTPKFRGS+I+EL +F+ A+V+DIA+VH +AYVFGLEK
Sbjct: 92  NALEMNELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEK 136