Miyakogusa Predicted Gene
- Lj0g3v0178909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0178909.1 Non Chatacterized Hit- tr|I3SY87|I3SY87_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.53,0,no
description,Histone deacetylase domain; SUBFAMILY NOT NAMED,NULL;
HISTONE DEACETYLASE,Histone
dea,NODE_26479_length_899_cov_104.684090.path3.1
(215 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |... 348 2e-96
AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase... 118 3e-27
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:2456... 117 4e-27
AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 116 1e-26
AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 115 2e-26
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of t... 115 2e-26
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase... 110 1e-24
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | h... 65 3e-11
AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone ... 62 4e-10
AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |... 61 5e-10
AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr... 60 8e-10
AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 | chr5:90993... 53 1e-07
AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:137701... 50 1e-06
>AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |
chr4:16102774-16105439 REVERSE LENGTH=423
Length = 423
Score = 348 bits (892), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/215 (76%), Positives = 181/215 (84%)
Query: 1 MGFFVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSYP 60
MGF VFGNVAIAAR+AQR H LKR+FIIDFDVHHGNGTNDAF +DPDIFFLS HQDGSYP
Sbjct: 209 MGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYP 268
Query: 61 GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGH 120
GTGK LNLPLPGGSGD A+RTVF+E++VPCAQRFKPDIILVSAGYD H
Sbjct: 269 GTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAH 328
Query: 121 VLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFRALIG 180
VLDPLANLQFTT TYY LA IK+LAK++CGGRCVFFLEGGYNL+SLS SVADSFRAL+G
Sbjct: 329 VLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLG 388
Query: 181 DQSLASEFDNPNILYEEPTAKIKQAIQRIKHIHSL 215
+ SLASEFDNP LY+EP K++ AIQR K IH L
Sbjct: 389 EDSLASEFDNPAYLYDEPMRKVRDAIQRAKSIHCL 423
>AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5
| chr5:24567137-24570917 REVERSE LENGTH=660
Length = 660
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 1 MGFFVFGNVAIAARYAQRVH---ALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-- 55
MGF +F NVA+AA + +K++ I+D+DVHHGNGT F+ DP + F S H+
Sbjct: 165 MGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHE 224
Query: 56 -DGSYPG--TGKFXXXXXXXXXXXXLNLPL-PGGSGDTAIRTVFDEVVVPCAQRFKPDII 111
G YP G + +N+P G GD +D +++P A+ F PD+I
Sbjct: 225 YGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVI 284
Query: 112 LVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSV 171
+SAG+D + DPL T Y ++ + + A+ G+ V LEGGYNL S++ S
Sbjct: 285 FLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFAQ----GKIVLALEGGYNLDSIAKSS 340
Query: 172 ADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQR 208
+ L+ D+ + P E T ++ QA+++
Sbjct: 341 LACVQVLLEDKQIQGP---PEAYPFESTWRVIQAVRK 374
>AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 |
chr5:24567137-24570917 REVERSE LENGTH=664
Length = 664
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 12/217 (5%)
Query: 1 MGFFVFGNVAIAARYAQRVH---ALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-- 55
MGF +F NVA+AA + +K++ I+D+DVHHGNGT F+ DP + F S H+
Sbjct: 165 MGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHE 224
Query: 56 -DGSYPG--TGKFXXXXXXXXXXXXLNLPL-PGGSGDTAIRTVFDEVVVPCAQRFKPDII 111
G YP G + +N+P G GD +D +++P A+ F PD+I
Sbjct: 225 YGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVI 284
Query: 112 LVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSV 171
+SAG+D + DPL T Y ++ + + G+ V LEGGYNL S++ S
Sbjct: 285 FLSAGFDAAINDPLGGCCVTPYGYSVMLKKVGVELMEFAQGKIVLALEGGYNLDSIAKSS 344
Query: 172 ADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQR 208
+ L+ D+ + P E T ++ QA+++
Sbjct: 345 LACVQVLLEDKQIQGP---PEAYPFESTWRVIQAVRK 378
>AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365367 FORWARD LENGTH=552
Length = 552
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 23 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-DGS--YPGTGKFXXXXXXXXXXXXLN 79
K+V I+D+DVHHGNGT + F + + ++S H+ +G YPGTG +N
Sbjct: 305 KKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGAADEVGSNGGEGYCVN 364
Query: 80 LPLP-GGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYML 138
+P GG GD F VV+P A F PD +++SAG+D DPL T Y
Sbjct: 365 VPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGY--- 421
Query: 139 ASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFRALIGDQ 182
S + Q+ DLCGG+ + LEGGYNL+S+S S + L+G+
Sbjct: 422 -SRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGEN 464
>AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365399 FORWARD LENGTH=564
Length = 564
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 23 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ-DGS--YPGTGKFXXXXXXXXXXXXLN 79
K+V I+D+DVHHGNGT + F + + ++S H+ +G YPGTG +N
Sbjct: 305 KKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGAADEVGSNGGEGYCVN 364
Query: 80 LPLP-GGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYML 138
+P GG GD F VV+P A F PD +++SAG+D DPL T Y
Sbjct: 365 VPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGY--- 421
Query: 139 ASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFRALIGDQ 182
S + Q+ DLCGG+ + LEGGYNL+S+S S + L+G+
Sbjct: 422 -SRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGEN 464
>AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of the
RPD3/HDA1 superfamily 18 | chr5:24571297-24574372
REVERSE LENGTH=682
Length = 682
Score = 115 bits (289), Expect = 2e-26, Method: Composition-based stats.
Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 1 MGFFVFGNVAIAARYAQRVHA---LKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQD- 56
MGF +F NVA+AA + +K++ I+D+D+HHGNGT F+ D + S H+
Sbjct: 198 MGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHD 257
Query: 57 -GS-YP--GTGKFXXXXXXXXXXXXLNLPLP-GGSGDTAIRTVFDEVVVPCAQRFKPDII 111
GS YP G F +N+P GG GD V++ +++P + FKPDII
Sbjct: 258 HGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDII 317
Query: 112 LVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSV 171
L+SAG+D + DPL T Y ++ + + A G+ V LEGGYNL+SL S
Sbjct: 318 LLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAH----GKIVLALEGGYNLESLGKSS 373
Query: 172 ADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQ 207
+ L+ D+ + + + E T ++ QA++
Sbjct: 374 LACVQVLLEDKQIHGSSETYPL---ESTRRVIQAVR 406
>AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8
| chr1:2672527-2674469 FORWARD LENGTH=377
Length = 377
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 7/218 (3%)
Query: 2 GFFVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQD----- 56
G+ N A+A + A + RV +ID DVH+GNGT + FY + +S H +
Sbjct: 153 GYCFLNNAALAVKLALNSGSCSRVAVIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWG 212
Query: 57 GSYPGTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAG 116
S+P G LN+PLP G+GD +E+VVP +RF PD++++ G
Sbjct: 213 SSHPQKGSIDELGEDVGLGYNLNVPLPNGTGDRGYEYAMNELVVPAVRRFGPDMVVLVVG 272
Query: 117 YDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFR 176
D DP T Y + ++ +A++ GR + EGGY++ +Y +
Sbjct: 273 QDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEHSHGRLLMVQEGGYHVTYAAYCLHAMLE 332
Query: 177 ALIGDQSLASEFDNPNILYEEPTAKIKQAIQRIKHIHS 214
++ + +P Y E A A++ IK H+
Sbjct: 333 GVL--KIPEPHLSDPIAYYPEEEANAVAAVESIKTYHT 368
>AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 |
histone deacetylase 6 | chr5:25315834-25318227 REVERSE
LENGTH=471
Length = 471
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 22 LKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGS-YPGTGKFXXXXXXXXXXXXLNL 80
KRV ID DVHHG+G +AFY + +SFH+ G +PGTG LN+
Sbjct: 179 FKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNV 238
Query: 81 PLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYD 118
PL G D + R++F ++ + ++P+ +++ G D
Sbjct: 239 PLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGAD 276
>AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone
deacetylase 1 | chr4:17896663-17899057 REVERSE
LENGTH=469
Length = 469
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 2 GFFVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSY-P 60
GF ++ +A + H +RV +D D+HHG+G +AFY + +SFH+ G Y P
Sbjct: 157 GFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFP 214
Query: 61 GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYD 118
GTG LN+PL G D + +F ++ + F+P +++ G D
Sbjct: 215 GTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGAD 272
>AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |
histone deacetylase 1 | chr4:17896493-17899057 REVERSE
LENGTH=501
Length = 501
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 2 GFFVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSY-P 60
GF ++ +A + H +RV +D D+HHG+G +AFY + +SFH+ G Y P
Sbjct: 157 GFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFP 214
Query: 61 GTGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYD 118
GTG LN+PL G D + +F ++ + F+P +++ G D
Sbjct: 215 GTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGAD 272
>AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 |
chr3:16226769-16229752 REVERSE LENGTH=426
Length = 426
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 24 RVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQ--DGSYPGTGKFXXXXXXXXXXXXLNLP 81
RV ID DVHHG+G +AFY + +SFH+ D +PGTG +N+P
Sbjct: 165 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVP 224
Query: 82 LPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYMLASS 141
L G D++ +F ++ + ++P I++ G D D L + +
Sbjct: 225 LKDGIDDSSFNRLFRTIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKF 284
Query: 142 IKQL 145
+K+
Sbjct: 285 VKKF 288
>AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 |
chr5:9099321-9101598 REVERSE LENGTH=387
Length = 387
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
Query: 2 GFFVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSYPG 61
GF F ++++ +A + RV IID D H GNG DD ++ L + YP
Sbjct: 209 GFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPF 268
Query: 62 TGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHV 121
+ + G + D +R + DE + ++ F+P++++ +AG D
Sbjct: 269 DYRARRFIDQKVEV------MSGTTTDEYLRKL-DEALEVASRNFQPELVIYNAGTDILD 321
Query: 122 LDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADSFRAL 178
DPL L+ + + + A++ V GGY +KS + +ADS L
Sbjct: 322 GDPLGLLKISPDGITSRDEKVFRFARE-KNIPLVMLTSGGY-MKSSARVIADSIENL 376
>AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 |
chr5:13770121-13771712 REVERSE LENGTH=409
Length = 409
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 2 GFFVFGNVAIAARYAQRVHALKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSFHQDGSYPG 61
GF +V +A + + + KRV I+ HG+ +AF D + +SFH+ G
Sbjct: 156 GFGYVNDVVLAI--LELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSFHKVGD--- 210
Query: 62 TGKFXXXXXXXXXXXXLNLPLPGGSGDTAIRTVFDEVVVPCAQRFKPDIILVSAGYDGHV 121
TG LN PL G D ++R +F V+ + ++P++I++ G D
Sbjct: 211 TGDISDYGEGKGQYYSLNAPLKDGLDDFSLRGLFIPVIHRAMEIYEPEVIVLQCGADSLA 270
Query: 122 LDPLANLQFT 131
DP +
Sbjct: 271 GDPFGTFNLS 280