Miyakogusa Predicted Gene

Lj0g3v0178359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0178359.1 Non Chatacterized Hit- tr|D8RX66|D8RX66_SELML
Putative uncharacterized protein OS=Selaginella
moelle,33.75,4e-16,SPRY,SPla/RYanodine receptor SPRY; seg,NULL;
Concanavalin A-like lectins/glucanases,Concanavalin A-l,CUFF.11283.1
         (482 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06536.1 | Symbols:  | SPla/RYanodine receptor (SPRY) domain-...   180   2e-45
AT4G06534.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   103   3e-22

>AT4G06536.1 | Symbols:  | SPla/RYanodine receptor (SPRY)
           domain-containing protein | chr4:3360746-3361255 FORWARD
           LENGTH=169
          Length = 169

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 117/167 (70%), Gaps = 15/167 (8%)

Query: 318 GMKLVFESEKAEWIGADKVIGCGFDPRQKKVFFTLDSELMHVIHCQSEGFGTPLYPTLAA 377
           GMKLV ESEK EW   +KV+GCG+DPR+KKV+FT++S L+HVI+C+++ FGTPLYPTLA+
Sbjct: 3   GMKLVCESEKHEWAKENKVVGCGYDPRKKKVYFTVNSHLVHVINCKADEFGTPLYPTLAS 62

Query: 378 NIDIQVLVNFGQSAFKYAPANAQRTPNPCFIAPLVNSPTLSYDDSKELFSMGRIDSQWL- 436
           N + +VLVN GQS F Y+PAN QRT NPC  A          +DSKELFS+GRIDS +L 
Sbjct: 63  NTEARVLVNLGQSPFYYSPANGQRTSNPCAGA------VAGLEDSKELFSIGRIDSHYLS 116

Query: 437 ----NRSATK----GSHNSNGNYFRTMDFDEESEADLFEIVLDGPGK 475
               NR  +     G      ++ R +D+DEES+ADLFEI L+  GK
Sbjct: 117 NFFINRGNSDEIASGRATVGNSHRRKLDYDEESDADLFEIALERSGK 163


>AT4G06534.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; Has 22 Blast hits to 22 proteins in 8 species:
           Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
           - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
           BLink). | chr4:3356870-3358087 FORWARD LENGTH=405
          Length = 405

 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 116/277 (41%), Gaps = 49/277 (17%)

Query: 56  QLDQGS-KKSGNFYAF---RSGVSG---KRTTLFSWAENPSMAVDAGENGWSRFAFTNXX 108
           QLD    K+ GN   +   R+  +G    +  LF W ++P++  +A ENGW+RF F    
Sbjct: 65  QLDTSDIKRRGNIKNYSISRTATAGGFPSKPGLFIWTDHPALVTEAVENGWTRFGFAVHE 124

Query: 109 XXXXXXXXXXXXXXXXXCVAPPAVGGSGRESEAEITWEVSRGSAEFMQKVRLNPGMRNSH 168
                            C           +    I+WEVS GS EF Q ++ N     + 
Sbjct: 125 PAPLVSGASPGSVLLGLCTT-----AGSEDPGVVISWEVSNGSVEFTQTIKFNQAFNETV 179

Query: 169 QXXXXXXXXXXPSMGVASVIRTVLPLPGPPLGNYAFPQEAYFEIIILYXXXXXXXXXXXX 228
                             ++R  LPLPGP L + AFPQEAYFEI IL             
Sbjct: 180 NAKKHLM-----------ILRAGLPLPGPQLISSAFPQEAYFEITILE------------ 216

Query: 229 XXXXXTMLLVQGNSNAKGNSEA-LVHVTSSNGHKINSVEEIKLDSREGGKKSESVKFSLG 287
                   + Q +S   G+    LV    +   K   ++ +K    +G  K+E    SLG
Sbjct: 217 --------ITQHHSGEAGDVGCDLVEGEKTKLFKNQGLKLVKRSEWDG--KNEEAVLSLG 266

Query: 288 LTTGGPV---LLNVPGSYPGSIGFNSNGSVYLDGMKL 321
           L TGG        +PG +P SIGF S+G++YLDG  L
Sbjct: 267 LATGGSFGAGETRLPGKFPASIGFQSDGAIYLDGTYL 303