Miyakogusa Predicted Gene

Lj0g3v0177449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0177449.1 tr|A9RIS8|A9RIS8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_114815,33.08,0.00003, ,CUFF.11206.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76920.1 | Symbols:  | F-box family protein | chr1:28892295-2...   276   5e-75

>AT1G76920.1 | Symbols:  | F-box family protein |
           chr1:28892295-28893419 FORWARD LENGTH=374
          Length = 374

 Score =  276 bits (707), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/215 (65%), Positives = 169/215 (78%), Gaps = 10/215 (4%)

Query: 1   MVLTELAALYYSAVSDTDNSNNRWMKFSSNLPSKPRSPVLVGDSAFALCEVGSPWRSQWK 60
           MVLTELAALYYS         N+W+KFSSNLPSKPRSPVL+  S FALC+VGSPWRSQWK
Sbjct: 168 MVLTELAALYYSGTVVA----NQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWK 223

Query: 61  LFTCRVAP-ALAKKAGSRLERNEWGDVFDILKRPRLVRGAGD-RVLMVGGLKSSFSLNAP 118
           LF+C++    +       LE++EWGD+FDI+KRPRL+RG GD ++LM+GGLKS+FSLN  
Sbjct: 224 LFSCKLTNLTITHTNWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPA 283

Query: 119 CSTILILRLDLGTLEWDDAGRMPPEMFRCFQEAGKFKVFGAGDRVCFSAKRIGKLALWDR 178
           CSTILILRLDL +LEW++AGRMP EM+R FQE+ KFKVFG GDRV FSAKR+GKLA+WD 
Sbjct: 284 CSTILILRLDLESLEWEEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWD- 342

Query: 179 NADQGAEWRWIDNVPGNGDGLYRGFVFEGRLDALP 213
              QG  WRWI+ VPG  DGL RGFVF+ +L  +P
Sbjct: 343 -CWQG--WRWIEGVPGYADGLCRGFVFDAKLTLMP 374