Miyakogusa Predicted Gene

Lj0g3v0177209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0177209.1 Non Chatacterized Hit- tr|F6GW54|F6GW54_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,68.75,2e-18,
,CUFF.11190.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27830.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    94   2e-20

>AT2G27830.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD
           LENGTH=190
          Length = 190

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 56/76 (73%)

Query: 3   PESTVGELVAAVARQYVKEVRCSILPTNDASDFNLHYSQFSLESLHREEKLVELGSRNFF 62
           PESTV +L+ A  RQYVKE R   LP ++ S F+LHYSQFSLES+ R+EKL+ LGSRNFF
Sbjct: 91  PESTVSDLIDAAVRQYVKEARRPFLPESEPSRFDLHYSQFSLESIVRDEKLISLGSRNFF 150

Query: 63  MCPRLFSAVFLQCYVA 78
           +C R  +  F+ C ++
Sbjct: 151 LCGRKETGGFIGCGLS 166