Miyakogusa Predicted Gene

Lj0g3v0176109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0176109.1 Non Chatacterized Hit- tr|K4BF75|K4BF75_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,33.12,0.000000003,seg,NULL,CUFF.11097.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62020.1 | Symbols: AT-HSFB2A, HSFB2A | heat shock transcript...    48   2e-06

>AT5G62020.1 | Symbols: AT-HSFB2A, HSFB2A | heat shock transcription
           factor  B2A | chr5:24916212-24917194 FORWARD LENGTH=299
          Length = 299

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 46/145 (31%)

Query: 1   MRLLCNNIYSLMSSYASGGGNNQQADVGSSGGCAQGSRESVLAGVGPLDLMPPA-----T 55
           M+ +C+NIYSLMS+Y      ++    G  G  +Q           P++ +P        
Sbjct: 196 MKSICDNIYSLMSNYVGSQPTDRSYSPG--GSSSQ-----------PMEFLPAKRFSEME 242

Query: 56  ETAPVEMNPKLFGVAIGAKRARENXXXXXXXXXXXXXXEDDTLLRMHQPPPAEVKSEPSD 115
                E +P+LFGV IG KR R                         Q     V  E SD
Sbjct: 243 IEEEEEASPRLFGVPIGLKRTRSEGV---------------------QVKTTAVVGENSD 281

Query: 116 CQNHLENQQTPWLNLCRTTNQRVCN 140
                  ++TPWL     TNQRVCN
Sbjct: 282 -------EETPWLRHYNRTNQRVCN 299