Miyakogusa Predicted Gene

Lj0g3v0175929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0175929.1 Non Chatacterized Hit- tr|B9FDC4|B9FDC4_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,54.29,0.000000000000001,UNCHARACTERIZED,NULL; CTL
TRANSPORTER,Choline transporter-like,CUFF.11080.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15380.1 | Symbols:  | Plasma-membrane choline transporter fa...   353   6e-98

>AT3G15380.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr3:5193319-5196435 FORWARD LENGTH=700
          Length = 700

 Score =  353 bits (905), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 160/210 (76%), Positives = 184/210 (87%), Gaps = 2/210 (0%)

Query: 1   MRGPLGAVVGRYPSSDGTTHLGGIIRHSRKCRDILVLVIFIAFWISMIVNSSFAFNKGNP 60
           MRGPLGAV+GRY SSDG+    GII+H+RKCRDI  L+IFIAFW+SMIVNSSF FN+GNP
Sbjct: 1   MRGPLGAVIGRYTSSDGSAPNDGIIKHNRKCRDITFLIIFIAFWVSMIVNSSFGFNQGNP 60

Query: 61  LMLTFVLDYNGNVCGDQHE--GLHELELKYWLNPYQVYQSGLKDSEFKLANARSICLLDC 118
           L LT+ LDY GNVCG +H    L +LEL+YWLNP QVY+SGLKD E KLANAR+ICLLDC
Sbjct: 61  LRLTYGLDYEGNVCGSKHRHRDLTQLELRYWLNPNQVYESGLKDGELKLANARTICLLDC 120

Query: 119 PNPPDDSLSWVCDYPEGDIRVSMNDWIDMNYDYYEFLTPEMKNSSLQLQGPCYPVIFPSI 178
           P P DD+L+WVCDYP+G+IR+ MNDWID NYDY+EFLTPEM+NSSLQLQGPCYPVIFPS+
Sbjct: 121 PAPSDDTLNWVCDYPDGEIRLKMNDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVIFPSV 180

Query: 179 NVYWSCQFIARASNSSLTHWQKLGGVNINE 208
           NVYWSCQ+IARASNSSL HWQ++GGVNI E
Sbjct: 181 NVYWSCQYIARASNSSLRHWQQMGGVNIQE 210