Miyakogusa Predicted Gene

Lj0g3v0174579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0174579.1 Non Chatacterized Hit- tr|D8S2H6|D8S2H6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.43,1e-17,seg,NULL,CUFF.10970.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   100   5e-22

>AT3G03210.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 24 plant structures; EXPRESSED
          DURING: 15 growth stages; Has 59 Blast hits to 59
          proteins in 17 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
          Eukaryotes - 3 (source: NCBI BLink). |
          chr3:740987-742093 FORWARD LENGTH=368
          Length = 368

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 1  MLGAVQLGLLAACVVLFVPMGMAGWHLSRNKVLFFSGALFITLAVGVHLTPYFP 54
          MLGA+ LG+LAAC VLFVPM MAGWHLSRNK+LFFSGALFI+LAV VHLTPYFP
Sbjct: 1  MLGAIHLGVLAACFVLFVPMAMAGWHLSRNKMLFFSGALFISLAVCVHLTPYFP 54



 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 2/51 (3%)

Query: 89  DWERLKRHDVLELLNGSWVMVAGDSQARMFTLSLISLVL--DSERVESVRA 137
           ++++L + DV +LLNGSWV+VAGDSQAR   LSL++LVL  DS+ ++SVR 
Sbjct: 123 EFQKLDKFDVSDLLNGSWVVVAGDSQARFVALSLLNLVLGSDSKAMDSVRG 173