Miyakogusa Predicted Gene

Lj0g3v0174419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0174419.1 CUFF.10957.1
         (502 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25640.1 | Symbols:  | SPOC domain / Transcription elongation...   114   2e-25
AT5G11430.1 | Symbols:  | SPOC domain / Transcription elongation...   101   1e-21
AT5G25520.2 | Symbols:  | SPOC domain / Transcription elongation...    93   4e-19
AT5G25520.1 | Symbols:  | SPOC domain / Transcription elongation...    57   3e-08

>AT2G25640.1 | Symbols:  | SPOC domain / Transcription elongation
           factor S-II protein | chr2:10910836-10913908 FORWARD
           LENGTH=745
          Length = 745

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 69  QNADAVVGNIQSHEKCKNLAQKVAPVEKLWDGYLKLNPSTTVSAIVFYNSGEKMPDIKWS 128
           ++AD V     S  K K  +  +   E+LW+G L+L+PST  S I    SGEK    +W 
Sbjct: 570 EDADIVSSKPSSDLKSKTTSVFIPDGERLWEGVLQLSPSTVSSVIGILRSGEKTTTKEWP 629

Query: 129 EFVEVKGRVKLVDFENYVRDVCRSPNRGLMVVSLRWKEGSSKYGPTDMKTVAEKYKESER 188
             +E+KGRV+L  FE +VR++  S +R +MV+    KE  SK    ++  V + Y +  R
Sbjct: 630 ILLEIKGRVRLDAFEKFVRELPNSRSRAVMVMCFVCKEECSKTEQENISEVVDSYAKDGR 689

Query: 189 VGLAKLLPGIDLYICPRSDKIITLLAKHGSYNGKRAVK-VNKDSLIGCVVWKKNQV 243
           VG A+   G++LY+CP   + + +L K    N    +K +N D LIG VVW+++ +
Sbjct: 690 VGYAEPASGVELYLCPTRGRTVEILNKIVPRNQLDFLKSINDDGLIGVVVWRRHTI 745


>AT5G11430.1 | Symbols:  | SPOC domain / Transcription elongation
           factor S-II protein | chr5:3648469-3652256 FORWARD
           LENGTH=873
          Length = 873

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 83/149 (55%)

Query: 95  EKLWDGYLKLNPSTTVSAIVFYNSGEKMPDIKWSEFVEVKGRVKLVDFENYVRDVCRSPN 154
           E+ WDG L+L+ S+ V     + SGEK    +W   VEVKGRV+L  F  +++++ +S  
Sbjct: 541 ERAWDGILQLSMSSVVPVAGIFKSGEKAETSEWPAMVEVKGRVRLSGFGKFIQELPKSRT 600

Query: 155 RGLMVVSLRWKEGSSKYGPTDMKTVAEKYKESERVGLAKLLPGIDLYICPRSDKIITLLA 214
           R LMV+ L +K+G S+     +  V + Y   +RVG A+   G++LY+CP   + + LL 
Sbjct: 601 RALMVMYLAYKDGISESQRGSLIEVIDSYVADQRVGYAEPASGVELYLCPTRGETLDLLN 660

Query: 215 KHGSYNGKRAVKVNKDSLIGCVVWKKNQV 243
           K  S      VK     L+G VVW++  V
Sbjct: 661 KVISQEQLDEVKSLDIGLVGVVVWRRAVV 689


>AT5G25520.2 | Symbols:  | SPOC domain / Transcription elongation
           factor S-II protein | chr5:8885550-8889484 FORWARD
           LENGTH=997
          Length = 997

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 1/141 (0%)

Query: 95  EKLWDGYLKLNPSTTVSAIVFYNSGEKMPDIKWSEFVEVKGRVKLVDFENYVRDVCRSPN 154
           +++WDG L+L+ ++ VS    + SGEK    +W   VEVKGRV+L  F  +V+++  S +
Sbjct: 653 DRIWDGILQLSSASVVSVTGIFKSGEKAKTSEWPTMVEVKGRVRLSAFGKFVKELPLSRS 712

Query: 155 RGLMVVSLRWKEGSSKYGPTDMKTVAEKYKESERVGLAKLLPGIDLYICPRSDKIITLLA 214
           R LMV+++  K G S+     +  VA+ Y   +RVG A+   G++LY+CP   + + LL+
Sbjct: 713 RVLMVMNVVCKNGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVELYLCPTLGETLDLLS 772

Query: 215 KHGSYNGKRAVKVNKD-SLIG 234
           K  S +    VK ++D  LIG
Sbjct: 773 KIISKDYLDEVKCSEDIGLIG 793


>AT5G25520.1 | Symbols:  | SPOC domain / Transcription elongation
           factor S-II protein | chr5:8885550-8888157 FORWARD
           LENGTH=735
          Length = 735

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 95  EKLWDGYLKLNPSTTVSAIVFYNSGEKMPDIKWSEFVEVKGRVKLVDFENYVRDVCRSPN 154
           +++WDG L+L+ ++ VS    + SGEK    +W   VEVKGRV+L  F  +V+++  S +
Sbjct: 653 DRIWDGILQLSSASVVSVTGIFKSGEKAKTSEWPTMVEVKGRVRLSAFGKFVKELPLSRS 712

Query: 155 RGLM 158
           R LM
Sbjct: 713 RVLM 716