Miyakogusa Predicted Gene

Lj0g3v0174029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0174029.1 gi|3695062|gb|AF064789.1|.path2.1
         (411 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03100.1 | Symbols:  | Rho GTPase activating protein with PAK...   403   e-112
AT2G46710.1 | Symbols:  | Rho GTPase activating protein with PAK...   335   5e-92
AT5G22400.1 | Symbols:  | Rho GTPase activating protein with PAK...   329   2e-90
AT3G11490.1 | Symbols:  | rac GTPase activating protein | chr3:3...   320   8e-88
AT1G08340.1 | Symbols:  | Rho GTPase activating protein with PAK...   303   2e-82

>AT4G03100.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr4:1374361-1375913
           FORWARD LENGTH=430
          Length = 430

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/296 (67%), Positives = 225/296 (76%), Gaps = 7/296 (2%)

Query: 1   MVGWRVDSPAD-------VISAVHPMEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXX 53
           +V  RVD+  D       + SAVH MEIGWPTNV+H+T VTFDRF+GFLGLP EL+V   
Sbjct: 53  VVSCRVDNRQDDGGVGGGISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIP 112

Query: 54  XXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQ 113
                            MQCSYD KGNSVPTILLLMQERLYSQ GL AEGIFRINPEN Q
Sbjct: 113 CRVPSASVSVFGVSAESMQCSYDEKGNSVPTILLLMQERLYSQQGLKAEGIFRINPENSQ 172

Query: 114 EEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVK 173
           EEH+RDQLNRG+VP+NIDVHCLAGLIKAWFRELPSGVLDGLSPE+VL CNTE+E V+L+K
Sbjct: 173 EEHVRDQLNRGIVPENIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLNCNTEDESVELIK 232

Query: 174 QLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMN 233
           QLKPTE ALLNWA+DLMADVVEEEE NKM+ARNIAMVFAPNMTQM+DPLTALMHAVQVMN
Sbjct: 233 QLKPTESALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMTDPLTALMHAVQVMN 292

Query: 234 LLKTLILKTLSEREEATTAGYXXXXXXXXXXXXEDEYDSQLEMYTSAELRGSQSDC 289
           LLKTLI KTL+EREE  T               + + D+  +M  S E + + S+C
Sbjct: 293 LLKTLITKTLAEREENATGSEGYSPSHSSNSQTDSDSDNAQDMEVSCESQATDSEC 348


>AT2G46710.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr2:19192105-19194656
           FORWARD LENGTH=455
          Length = 455

 Score =  335 bits (858), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 163/239 (68%), Positives = 188/239 (78%), Gaps = 3/239 (1%)

Query: 11  DVISAVHPMEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXX 70
           DV+++   M+IGWPT VKHV+ VTFDRFNGFLGLP ELE                     
Sbjct: 98  DVVAS---MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSASVSVFGVSAKS 154

Query: 71  MQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNI 130
           MQCSYD +GNSVPTILL MQ+RLY++GGL AEGIFRINP+NG+EEH+R QLN GVVP  I
Sbjct: 155 MQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEEHVRRQLNCGVVPRGI 214

Query: 131 DVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLM 190
           DVHCLAGLIKAWFRELP+GVLD L+PEQV+ CNTEE+  +LV  L P E A+L+WA+ LM
Sbjct: 215 DVHCLAGLIKAWFRELPTGVLDVLTPEQVMRCNTEEDCSRLVILLPPVESAILDWAIGLM 274

Query: 191 ADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEA 249
           ADVVE E+ NKM+ARN+AMVFAPNMTQM+DPLTAL+HAVQVMN LKTLIL  L ERE A
Sbjct: 275 ADVVEHEQFNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILMNLKERENA 333


>AT5G22400.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr5:7423050-7425335
           REVERSE LENGTH=466
          Length = 466

 Score =  329 bits (844), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 182/231 (78%)

Query: 19  MEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 78
           MEIGWPTNV+HV  VTFDRFNGFLGLP+E E                     MQ SYDS+
Sbjct: 115 MEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSR 174

Query: 79  GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 138
           GN VPTILLLMQ  LYSQGGL AEGIFR+  EN +EE +R+QLNRG +P+ IDVHCLAGL
Sbjct: 175 GNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEAVREQLNRGFIPERIDVHCLAGL 234

Query: 139 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 198
           IKAWFRELP+ VLD LSPEQV++C TEEE V+LV+ L PTE ALL+WA++LMADVV+ E 
Sbjct: 235 IKAWFRELPTSVLDSLSPEQVMQCQTEEENVELVRLLPPTEAALLDWAINLMADVVQYEH 294

Query: 199 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEA 249
            NKM++RNIAMVFAPNMTQM DPLTALM+AVQVMN LKTLI KTL ER+++
Sbjct: 295 LNKMNSRNIAMVFAPNMTQMDDPLTALMYAVQVMNFLKTLIEKTLRERQDS 345


>AT3G11490.1 | Symbols:  | rac GTPase activating protein |
           chr3:3617523-3619567 REVERSE LENGTH=435
          Length = 435

 Score =  320 bits (821), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 154/231 (66%), Positives = 185/231 (80%)

Query: 19  MEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 78
           MEIG PT+V+HV  VTFDRF+GFLGLP+E E                     MQ SYD++
Sbjct: 91  MEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDTR 150

Query: 79  GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 138
           GN VPTILL+MQ  LYS+GGL  EGIFRIN ENGQEE++R++LN+G++PDNIDVHCLA L
Sbjct: 151 GNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEEYIREELNKGIIPDNIDVHCLASL 210

Query: 139 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 198
           IKAWFRELPSGVLD LSPEQV+E  +E+E V+LV+ L  TE +LL+WA++LMADVVE E+
Sbjct: 211 IKAWFRELPSGVLDSLSPEQVMESESEDECVELVRLLPSTEASLLDWAINLMADVVEMEQ 270

Query: 199 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEA 249
            NKM+ARNIAMVFAPNMTQM DPLTALM+AVQVMN LKTLI+KTL +R+E+
Sbjct: 271 LNKMNARNIAMVFAPNMTQMLDPLTALMYAVQVMNFLKTLIVKTLKDRKES 321


>AT1G08340.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr1:2631308-2632669
           FORWARD LENGTH=331
          Length = 331

 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 179/233 (76%)

Query: 19  MEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 78
           M+IG PTN++HV  VTFDRF+GFLGLP E E                     MQ SYDS+
Sbjct: 1   MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSASATVFGVSTESMQLSYDSR 60

Query: 79  GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 138
           GN VP ILLL+Q RLY QGGL AEG+FRI  EN +EE +R+QLN+G++PD IDVHCLAGL
Sbjct: 61  GNCVPVILLLLQSRLYDQGGLQAEGVFRITGENSEEEFVREQLNKGIIPDGIDVHCLAGL 120

Query: 139 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 198
           IKAWFRELP GVLD L  EQV++C ++E+FV++V+ L  TE +LLNWA++LMADV++ E 
Sbjct: 121 IKAWFRELPRGVLDPLPSEQVMQCESDEDFVKVVRLLPQTEASLLNWAINLMADVIQFEH 180

Query: 199 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATT 251
            NKM++RN+A+VFAPNM+QM+DPLTALM+AVQVM LLK+L  KT+ ERE +++
Sbjct: 181 VNKMNSRNLALVFAPNMSQMADPLTALMYAVQVMKLLKSLTEKTVREREASSS 233