Miyakogusa Predicted Gene

Lj0g3v0174019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0174019.1 tr|O82460|O82460_LOTJA Rac GTPase activating
protein 3 (Fragment) OS=Lotus japonicus PE=2 SV=1,97.92,0,GTPASE
ACTIVATING PROTEIN,NULL; MKIAA1688 PROTEIN,NULL; seg,NULL; RHOGAP,Rho
GTPase-activating prote,CUFF.11433.1
         (458 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03100.1 | Symbols:  | Rho GTPase activating protein with PAK...   416   e-116
AT2G46710.1 | Symbols:  | Rho GTPase activating protein with PAK...   335   3e-92
AT5G22400.1 | Symbols:  | Rho GTPase activating protein with PAK...   332   3e-91
AT3G11490.1 | Symbols:  | rac GTPase activating protein | chr3:3...   323   2e-88
AT1G08340.1 | Symbols:  | Rho GTPase activating protein with PAK...   303   1e-82

>AT4G03100.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr4:1374361-1375913
           FORWARD LENGTH=430
          Length = 430

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/305 (67%), Positives = 232/305 (76%), Gaps = 7/305 (2%)

Query: 39  FLLAGLKKSMVGWRVDSPAD-------VISAVHPMEIGWPTNVKHVTLVTFDRFNGFLGL 91
           FLL  L+KS+V  RVD+  D       + SAVH MEIGWPTNV+H+T VTFDRF+GFLGL
Sbjct: 44  FLLTALRKSVVSCRVDNRQDDGGVGGGISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGL 103

Query: 92  PLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGI 151
           P EL+V                    MQCSYD KGNSVPTILLLMQERLYSQ GL AEGI
Sbjct: 104 PHELQVEIPCRVPSASVSVFGVSAESMQCSYDEKGNSVPTILLLMQERLYSQQGLKAEGI 163

Query: 152 FRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNT 211
           FRINPEN QEEH+RDQLNRG+VP+NIDVHCLAGLIKAWFRELPSGVLDGLSPE+VL CNT
Sbjct: 164 FRINPENSQEEHVRDQLNRGIVPENIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLNCNT 223

Query: 212 EEEFVQLVKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTA 271
           E+E V+L+KQLKPTE ALLNWA+DLMADVVEEEE NKM+ARNIAMVFAPNMTQM+DPLTA
Sbjct: 224 EDESVELIKQLKPTESALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMTDPLTA 283

Query: 272 LMHAVQVMNLLKTLILKTLSEREEATTAGYXXXXXXXXXXXXEDEYDSQLEMYTSAELRG 331
           LMHAVQVMNLLKTLI KTL+EREE  T               + + D+  +M  S E + 
Sbjct: 284 LMHAVQVMNLLKTLITKTLAEREENATGSEGYSPSHSSNSQTDSDSDNAQDMEVSCESQA 343

Query: 332 SQSDC 336
           + S+C
Sbjct: 344 TDSEC 348


>AT2G46710.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr2:19192105-19194656
           FORWARD LENGTH=455
          Length = 455

 Score =  335 bits (860), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 163/239 (68%), Positives = 188/239 (78%), Gaps = 3/239 (1%)

Query: 58  DVISAVHPMEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXX 117
           DV+++   M+IGWPT VKHV+ VTFDRFNGFLGLP ELE                     
Sbjct: 98  DVVAS---MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSASVSVFGVSAKS 154

Query: 118 MQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNI 177
           MQCSYD +GNSVPTILL MQ+RLY++GGL AEGIFRINP+NG+EEH+R QLN GVVP  I
Sbjct: 155 MQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEEHVRRQLNCGVVPRGI 214

Query: 178 DVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLM 237
           DVHCLAGLIKAWFRELP+GVLD L+PEQV+ CNTEE+  +LV  L P E A+L+WA+ LM
Sbjct: 215 DVHCLAGLIKAWFRELPTGVLDVLTPEQVMRCNTEEDCSRLVILLPPVESAILDWAIGLM 274

Query: 238 ADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEA 296
           ADVVE E+ NKM+ARN+AMVFAPNMTQM+DPLTAL+HAVQVMN LKTLIL  L ERE A
Sbjct: 275 ADVVEHEQFNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILMNLKERENA 333


>AT5G22400.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr5:7423050-7425335
           REVERSE LENGTH=466
          Length = 466

 Score =  332 bits (852), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/264 (62%), Positives = 196/264 (74%), Gaps = 5/264 (1%)

Query: 33  QGSPAAFLLAGLKKSMVGWRVDSPADVISAVHPMEIGWPTNVKHVTLVTFDRFNGFLGLP 92
           Q S  A L+A  ++S++  + +        +  MEIGWPTNV+HV  VTFDRFNGFLGLP
Sbjct: 87  QISLLALLVAIFRRSLISCKSNR-----RELCSMEIGWPTNVRHVAHVTFDRFNGFLGLP 141

Query: 93  LELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIF 152
           +E E                     MQ SYDS+GN VPTILLLMQ  LYSQGGL AEGIF
Sbjct: 142 VEFEPEVPRRAPSASATVFGVSTESMQLSYDSRGNCVPTILLLMQNCLYSQGGLQAEGIF 201

Query: 153 RINPENGQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTE 212
           R+  EN +EE +R+QLNRG +P+ IDVHCLAGLIKAWFRELP+ VLD LSPEQV++C TE
Sbjct: 202 RLTAENSEEEAVREQLNRGFIPERIDVHCLAGLIKAWFRELPTSVLDSLSPEQVMQCQTE 261

Query: 213 EEFVQLVKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTAL 272
           EE V+LV+ L PTE ALL+WA++LMADVV+ E  NKM++RNIAMVFAPNMTQM DPLTAL
Sbjct: 262 EENVELVRLLPPTEAALLDWAINLMADVVQYEHLNKMNSRNIAMVFAPNMTQMDDPLTAL 321

Query: 273 MHAVQVMNLLKTLILKTLSEREEA 296
           M+AVQVMN LKTLI KTL ER+++
Sbjct: 322 MYAVQVMNFLKTLIEKTLRERQDS 345


>AT3G11490.1 | Symbols:  | rac GTPase activating protein |
           chr3:3617523-3619567 REVERSE LENGTH=435
          Length = 435

 Score =  323 bits (828), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/258 (62%), Positives = 199/258 (77%), Gaps = 5/258 (1%)

Query: 39  FLLAGLKKSMVGWRVDSPADVISAVHPMEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVH 98
            L++ +++S++G  V    D+ S    MEIG PT+V+HV  VTFDRF+GFLGLP+E E  
Sbjct: 69  ILVSAIRRSVIGGCVGE-EDLCS----MEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPE 123

Query: 99  XXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPEN 158
                              MQ SYD++GN VPTILL+MQ  LYS+GGL  EGIFRIN EN
Sbjct: 124 VPRRAPSASATVFGVSTESMQLSYDTRGNIVPTILLMMQSHLYSRGGLRVEGIFRINGEN 183

Query: 159 GQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQL 218
           GQEE++R++LN+G++PDNIDVHCLA LIKAWFRELPSGVLD LSPEQV+E  +E+E V+L
Sbjct: 184 GQEEYIREELNKGIIPDNIDVHCLASLIKAWFRELPSGVLDSLSPEQVMESESEDECVEL 243

Query: 219 VKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQV 278
           V+ L  TE +LL+WA++LMADVVE E+ NKM+ARNIAMVFAPNMTQM DPLTALM+AVQV
Sbjct: 244 VRLLPSTEASLLDWAINLMADVVEMEQLNKMNARNIAMVFAPNMTQMLDPLTALMYAVQV 303

Query: 279 MNLLKTLILKTLSEREEA 296
           MN LKTLI+KTL +R+E+
Sbjct: 304 MNFLKTLIVKTLKDRKES 321


>AT1G08340.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr1:2631308-2632669
           FORWARD LENGTH=331
          Length = 331

 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 179/233 (76%)

Query: 66  MEIGWPTNVKHVTLVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSK 125
           M+IG PTN++HV  VTFDRF+GFLGLP E E                     MQ SYDS+
Sbjct: 1   MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSASATVFGVSTESMQLSYDSR 60

Query: 126 GNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGL 185
           GN VP ILLL+Q RLY QGGL AEG+FRI  EN +EE +R+QLN+G++PD IDVHCLAGL
Sbjct: 61  GNCVPVILLLLQSRLYDQGGLQAEGVFRITGENSEEEFVREQLNKGIIPDGIDVHCLAGL 120

Query: 186 IKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEE 245
           IKAWFRELP GVLD L  EQV++C ++E+FV++V+ L  TE +LLNWA++LMADV++ E 
Sbjct: 121 IKAWFRELPRGVLDPLPSEQVMQCESDEDFVKVVRLLPQTEASLLNWAINLMADVIQFEH 180

Query: 246 HNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATT 298
            NKM++RN+A+VFAPNM+QM+DPLTALM+AVQVM LLK+L  KT+ ERE +++
Sbjct: 181 VNKMNSRNLALVFAPNMSQMADPLTALMYAVQVMKLLKSLTEKTVREREASSS 233