Miyakogusa Predicted Gene
- Lj0g3v0173989.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0173989.1 Non Chatacterized Hit- tr|F7DS91|F7DS91_ORNAN
Uncharacterized protein (Fragment) OS=Ornithorhynchus
,39.76,0.0000000000006,RNA-binding domain, RBD,NULL; no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recogni,NODE_30547_length_1349_cov_53.416603.path2.1
(323 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 342 1e-94
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 317 1e-86
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 316 1e-86
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 295 3e-80
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 70 1e-12
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 70 2e-12
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 70 2e-12
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 68 7e-12
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 68 7e-12
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 68 7e-12
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 67 2e-11
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 66 2e-11
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 66 2e-11
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 66 2e-11
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 66 4e-11
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT2G47310.1 | Symbols: | flowering time control protein-related... 64 1e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 64 2e-10
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 61 8e-10
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 61 8e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 61 1e-09
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 61 1e-09
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 61 1e-09
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 61 1e-09
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 61 1e-09
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 60 2e-09
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 58 7e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 58 7e-09
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 58 8e-09
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 58 1e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 58 1e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 2e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 2e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 55 4e-08
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 55 5e-08
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 55 5e-08
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 55 6e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 55 6e-08
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 55 6e-08
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 55 7e-08
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 55 7e-08
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 55 9e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) fa... 54 2e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |... 53 3e-07
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 53 4e-07
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 52 4e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 52 5e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 51 8e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 51 1e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 50 2e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 7e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 48 9e-06
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/330 (57%), Positives = 222/330 (67%), Gaps = 16/330 (4%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
MLPKNVSE EV +LFS YGTIKDLQILRG+QQTSKGCAFLKYETK+QA++A+E+INGKHK
Sbjct: 112 MLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHK 171
Query: 61 MEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYG 120
MEGS+VPLVVKWADT + + D +PSLFGA+PMGYVPPYNGYG
Sbjct: 172 MEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYG 231
Query: 121 Y-QAPGSYGLMPYRMPPMQNQPGFHNMMPHMNHG--NALR---PD-LGPSMNPRNYHVPP 173
Y Q PG+YG Y +PP+QNQ F NM+ N G NAL+ PD + P + RN+ +PP
Sbjct: 232 YHQPPGTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPP 288
Query: 174 ASYV-SSYPAVPGLQHPMAYHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQV 232
+Y+ S YPA+ G P AY Q
Sbjct: 289 GNYMGSGYPAMRGHPFPFAY-----PRGIVSPRPLSSSPGSISPGMSTPLGIGLSSVVQT 343
Query: 233 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 292
EGP GANLFIY+IP+EFGDQ+LA AFQ FG V+SAKVFVDKATGVSKCFGFVSYDS AA
Sbjct: 344 EGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAA 403
Query: 293 QSAISMMNGYQLGGKKLKVQHKRDNKPGKP 322
Q+AI MMNG LGGKKLKVQ KRD+ G+P
Sbjct: 404 QNAIDMMNGRHLGGKKLKVQLKRDSNNGQP 433
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 317 bits (811), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/327 (53%), Positives = 209/327 (63%), Gaps = 33/327 (10%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
MLPKNVSE EV +LFS YGTIKDLQILRGS QTSKGC FLKYE+K+QA+AA+EA+NG+H
Sbjct: 106 MLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 165
Query: 61 MEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYG 120
MEG++VPL+VKWADT +V D Q+PS+FGA+PM YVPPYNGYG
Sbjct: 166 MEGANVPLIVKWADT---EKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYG 222
Query: 121 YQAPGSYGLMPYRMPPMQNQPGFHNMM-PHMNHGNALR---------PDLGPSMNPRNYH 170
Y PG+YG Y +PP+Q Q FHN++ P+ +G AL+ P L P RN+
Sbjct: 223 YHVPGTYG---YMLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAPR---RNFP 276
Query: 171 VPPASYVSSYPAVPGLQHPMAYHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 230
+Y GLQ+PMA+
Sbjct: 277 TALGNY-----GYHGLQYPMAF---------PRGMIPPRLPLTTVSPGISNNGTSIPSSL 322
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
Q EGP GANLFIY+IP+EF DQ+LA FQPFG+V+SAKVFVDKATG+SKCFGF+SYDS
Sbjct: 323 QTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQA 382
Query: 291 AAQSAISMMNGYQLGGKKLKVQHKRDN 317
AAQ+AI+ MNG QL GKKLKVQ KRDN
Sbjct: 383 AAQNAINTMNGCQLSGKKLKVQLKRDN 409
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILR-GSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
+PK+++E+++ LF + + ++ I++ + + +GC FL T++ A + + + K
Sbjct: 19 VPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKT 78
Query: 61 MEGSSVPLVVKWAD 74
+ G+S PL VK+AD
Sbjct: 79 LPGASSPLQVKYAD 92
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 316 bits (810), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/327 (53%), Positives = 209/327 (63%), Gaps = 33/327 (10%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
MLPKNVSE EV +LFS YGTIKDLQILRGS QTSKGC FLKYE+K+QA+AA+EA+NG+H
Sbjct: 115 MLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 174
Query: 61 MEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYG 120
MEG++VPL+VKWADT +V D Q+PS+FGA+PM YVPPYNGYG
Sbjct: 175 MEGANVPLIVKWADT---EKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYG 231
Query: 121 YQAPGSYGLMPYRMPPMQNQPGFHNMM-PHMNHGNALR---------PDLGPSMNPRNYH 170
Y PG+YG Y +PP+Q Q FHN++ P+ +G AL+ P L P RN+
Sbjct: 232 YHVPGTYG---YMLPPIQTQHAFHNVISPNQGNGRALQGTALTESVPPRLAPR---RNFP 285
Query: 171 VPPASYVSSYPAVPGLQHPMAYHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 230
+Y GLQ+PMA+
Sbjct: 286 TALGNY-----GYHGLQYPMAF---------PRGMIPPRLPLTTVSPGISNNGTSIPSSL 331
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
Q EGP GANLFIY+IP+EF DQ+LA FQPFG+V+SAKVFVDKATG+SKCFGF+SYDS
Sbjct: 332 QTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQA 391
Query: 291 AAQSAISMMNGYQLGGKKLKVQHKRDN 317
AAQ+AI+ MNG QL GKKLKVQ KRDN
Sbjct: 392 AAQNAINTMNGCQLSGKKLKVQLKRDN 418
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILR-GSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
+PK+++E+++ LF + + ++ I++ + + +GC FL T++ A + + + K
Sbjct: 19 VPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKT 78
Query: 61 MEGSSVPLVVKWAD 74
+ G+S PL VK+AD
Sbjct: 79 LPGASSPLQVKYAD 92
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 193/294 (65%), Gaps = 15/294 (5%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
MLPKNVSE EV +LFS YGTIKDLQILRG+QQTSKGCAFLKYETK+QA++A+E+INGKHK
Sbjct: 112 MLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHK 171
Query: 61 MEGSSVPLVVKWADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYG 120
MEGS+VPLVVKWADT + + D +PSLFGA+PMGYVPPYNGYG
Sbjct: 172 MEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYG 231
Query: 121 YQAPGSYGLMPYRMPPMQNQPGFHNMMPHMNHG--NALR---PD-LGPSMNPRNYHVPPA 174
Y PG+YG Y +PP+QNQ F NM+ N G NAL+ PD + P + RN+ +PP
Sbjct: 232 YHPPGTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPG 288
Query: 175 SYV-SSYPAVPGLQHPMAYHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVE 233
+Y+ S YPA+ G P AY Q E
Sbjct: 289 NYMGSGYPAMRGHPFPFAY-----PRGIVSPRPLSSSPGSISPGMSTPLGIGLSSVVQTE 343
Query: 234 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYD 287
GP GANLFIY+IP+EFGDQ+LA AFQ FG V+SAKVFVDKATGVSKCFG +S+D
Sbjct: 344 GPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 50/73 (68%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKM 61
L K +E EV +F +G ++D+ ++R + S+GC F+KY +K+ A+AA++ +NG + M
Sbjct: 218 LNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 277
Query: 62 EGSSVPLVVKWAD 74
G + PL+V++A+
Sbjct: 278 RGCNQPLIVRFAE 290
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 50/73 (68%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKM 61
L K +E EV +F +G ++D+ ++R + S+GC F+KY +K+ A+AA++ +NG + M
Sbjct: 218 LNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 277
Query: 62 EGSSVPLVVKWAD 74
G + PL+V++A+
Sbjct: 278 RGCNQPLIVRFAE 290
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 50/73 (68%)
Query: 2 LPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKM 61
L K +E EV +F +G ++D+ ++R + S+GC F+KY +K+ A+AA++ +NG + M
Sbjct: 143 LNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTM 202
Query: 62 EGSSVPLVVKWAD 74
G + PL+V++A+
Sbjct: 203 RGCNQPLIVRFAE 215
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
NL+I +P D L N F FG ++ AKV D+ TG+SK +GFV Y + A +A+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 298 MMNGYQLGGKKLKVQ 312
MNGY+ G+ L V+
Sbjct: 540 AMNGYRFEGRTLAVR 554
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
NL+I +P D L N F FG ++ AKV D+ TG+SK +GFV Y + A +A+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 298 MMNGYQLGGKKLKVQ 312
MNGY+ G+ L V+
Sbjct: 540 AMNGYRFEGRTLAVR 554
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
NL+I +P D L N F FG ++ AKV D+ TG+SK +GFV Y + A +A+
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 298 MMNGYQLGGKKLKVQ 312
MNGY+ G+ L V+
Sbjct: 540 AMNGYRFEGRTLAVR 554
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P N+++ ++P+E G+ +L F FG VIS+ V + +G S+CFGFV+++ EAA S
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 295 AISMMNGYQLGGKKLKV 311
A+ MNG LG L V
Sbjct: 285 AVEKMNGISLGDDVLYV 301
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
+ E GANL++ ++ D+ L F +G V S+KV ++ G+S+ FGFV+Y +PE
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPE 383
Query: 291 AAQSAISMMNGYQLGGKKLKV---QHKRDNK 318
A A+S MNG +G K L + Q K D +
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ ++ L F FG ++S KV +D TG SK +GFV ++ E+AQ+AI
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 299 MNGYQLGGKKLKVQH 313
+NG + K++ V H
Sbjct: 196 LNGMLMNDKQVFVGH 210
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
+G +L G+ ++V D +P P
Sbjct: 97 DGKELNGRHIRVNPAND-RPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
+G +L G+ ++V D +P P
Sbjct: 97 DGKELNGRHIRVNPAND-RPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 300 NGYQLGGKKLKVQHKRDNKPGKP 322
+G +L G+ ++V D +P P
Sbjct: 97 DGKELNGRHIRVNPAND-RPSAP 118
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LFI + D L +AF FG V+ AKV VD+ TG S+ FGFV+++ AA +AIS M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 300 NGYQLGGKKLKVQ 312
+G +L G+ ++V
Sbjct: 97 DGKELNGRHIRVN 109
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 291
V+ P L++ +IP+ + L + FQPFG VIS +V + TG S+ G+V+ S +
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINS 161
Query: 292 AQSAISMMNGYQLGGKKLKVQHKRDNKPG 320
A+ AI+ ++G ++GG++++V++ D PG
Sbjct: 162 AKIAIASLDGTEVGGREMRVRYSVDMNPG 190
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 1 MLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHK 60
L K +++EV+ +FS YG I+D+ + + +G AF+++ K+ ALAA++A+NG
Sbjct: 213 CLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFT 272
Query: 61 MEGSSVPLVVKWAD 74
+ GS PL+V++AD
Sbjct: 273 IRGSDQPLIVRFAD 286
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+ LFI + + L AF +G V+ +V +D+ TG S+ FGFV++ S EAA SAI
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 298 MMNGYQLGGKKLKVQHKRD 316
++G L G+ +KV + D
Sbjct: 100 ALDGRDLHGRVVKVNYAND 118
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+ LF+ + D L AF FG V A V D+ TG S+ FGFVS+ ++A +AI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 298 MMNGYQLGGKKLKVQ--HKRDNKPGKPY 323
M+G +L G++++V +R + P +
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSSF 122
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+ LF+ + D L AF FG V A V D+ TG S+ FGFVS+ ++A +AI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 298 MMNGYQLGGKKLKVQ--HKRDNKPGKPY 323
M+G +L G++++V +R + P +
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSSF 122
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P N+++ ++P+E D +L F +G + SA V D+ +G S+ FGFV++ SPEAA
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 295 AISMMNGYQLGGKKL---KVQHKRDNK 318
A+ MNG LG L + Q K D +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDRE 321
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G+NL++ ++ D+ L F +G V S KV ++ + G+S+ FGFV+Y +PE A A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAM 399
Query: 297 SMMNGYQLGGKKLKV 311
MNG +G K L V
Sbjct: 400 KEMNGKMIGRKPLYV 414
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ ++ L F FG ++S KV +D G SK +GFV ++ E AQ+AI
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 299 MNGYQLGGKKLKVQH 313
+NG L K++ V H
Sbjct: 206 LNGMLLNDKQVFVGH 220
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P N+++ ++P+E D +L F +G + SA V D+ +G S+ FGFV++ SPEAA
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 295 AISMMNGYQLGGKKL---KVQHKRDNK 318
A+ MNG LG L + Q K D +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDRE 321
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G+NL++ ++ D+ L F +G V S KV ++ + G+S+ FGFV+Y +PE A A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAM 399
Query: 297 SMMNGYQLGGKKLKV 311
MNG +G K L V
Sbjct: 400 KEMNGKMIGRKPLYV 414
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ ++ L F FG ++S KV +D G SK +GFV ++ E AQ+AI
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 299 MNGYQLGGKKLKVQH 313
+NG L K++ V H
Sbjct: 206 LNGMLLNDKQVFVGH 220
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
FI + D+ L +AF+ +G ++ AKV +DK +G S+ FGF+++D +A AI+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 299 MNGYQLGGKKLKVQ 312
MNG L G+ + V
Sbjct: 68 MNGMDLDGRTITVD 81
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G+NL++ ++ + D L F PFG + S KV D +GVS+ GFV++ +PE A AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI 384
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
+ MNG + K L V Q K D K
Sbjct: 385 TEMNGKMIVTKPLYVALAQRKEDRK 409
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ + + L F FG ++S KV VD +G SK +GFV YD+ EAAQ AI
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 299 MNGYQLGGKKLKV 311
+NG L K++ V
Sbjct: 193 LNGMLLNDKQVYV 205
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G+NL++ ++ + D L F PFG + S KV D +GVS+ GFV++ +PE A AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAI 384
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
+ MNG + K L V Q K D K
Sbjct: 385 TEMNGKMIVTKPLYVALAQRKEDRK 409
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ + + L F FG ++S KV VD +G SK +GFV YD+ EAAQ AI
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 299 MNGYQLGGKKLKV 311
+NG L K++ V
Sbjct: 193 LNGMLLNDKQVYV 205
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 232 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDK-ATGVSKCFGFVSYDSPE 290
V+ P L++ +IP+ + L + FQPFG VIS +V TG S+ G+V+ S
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSIN 161
Query: 291 AAQSAISMMNGYQLGGKKLKVQHKRDNKPG 320
+A+ AI+ ++G ++GG++++V++ D PG
Sbjct: 162 SAKIAIASLDGTEVGGREMRVRYSVDMNPG 191
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISA-KVFVDKATGVSKCFGFVSYDSPEAAQSA 295
GANLFI ++ + ++ L + F FG + S K+ D TG S+ FGF+SYDS EA+ +A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 296 ISMMNGYQLGGKKLKVQ--HKRDNK 318
I M G L +++ V +K+D K
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+++ ++ D L + F G+V+ A+V D+ +G SK FGFV+YDS + Q+AI +
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 300 NGYQLGGKKLKVQHKRDNKPGKPY 323
+G L G++++V P + Y
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQY 289
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LF+ ++P LA F+ G V +V DK TG S+ FGFV+ S ++A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 300 NGYQLGGKKLKV 311
NGY+L G+ L+V
Sbjct: 153 NGYELDGRPLRV 164
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 251 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 310
D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MNG +L G+ +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 311 VQH 313
V
Sbjct: 79 VNE 81
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 251 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 310
D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MNG +L G+ +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 311 VQH 313
V
Sbjct: 79 VNE 81
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+FI ++ + + L + F FG ++S KV VD ++G SK +GFV Y + E+AQ AI
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 299 MNGYQLGGKKLKV-----QHKRDNKPGK 321
+NG L K++ V + +RD+ K
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANK 211
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+NL++ ++ D+ L F PFG V S+KV D G SK GFV++ +PE A A+S
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376
Query: 298 MMNGYQLGGKKLKV---QHKRDNK 318
++G + K L V Q K D +
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRR 400
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
N+++ ++ + D DL NAF +G++ SA V D G SK FGFV++++ + A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVE 273
Query: 298 MMNGYQLGGKKLKV 311
+NG++ K+ V
Sbjct: 274 SLNGHKFDDKEWYV 287
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 233 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 292
+ P NLF+ + + + L AF FG V AKV D+ +G SK FGFV Y + E +
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 293 QSAISMMNGYQLGGKKLKVQHKRDNKPGKPY 323
I+ M+G L G + ++ R + + Y
Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 242 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 301
+ ++ ++ + DL F PFG V V +D+ TGVS+ FGFV++ S E AQ AI+ +NG
Sbjct: 244 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 303
Query: 302 YQLGGKKLKVQ 312
Y L+V+
Sbjct: 304 YGYDNLILRVE 314
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
++ + ++ ++ + DL F PFG V V +D+ TGVS+ FGFV++ S E AQ AI+
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 299 MNGYQLGGKKLKVQ 312
+NGY L+V+
Sbjct: 274 LNGYGYDNLILRVE 287
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 251 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 310
D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MNG +L G+ +
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 311 VQHKRDNKPG 320
V + G
Sbjct: 79 VNEAQSRGSG 88
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 300 NGYQLGGKKLKVQH 313
NG L G++++V
Sbjct: 319 NGADLDGRQIRVSE 332
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 300 NGYQLGGKKLKVQH 313
NG L G++++V
Sbjct: 319 NGADLDGRQIRVSE 332
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 300 NGYQLGGKKLKVQH 313
NG L G++++V
Sbjct: 319 NGADLDGRQIRVSE 332
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
L++ ++ D L N F G+V+ A+V D+ +G SK FGFV+ S + Q AI+ +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 300 NGYQLGGKKLKVQH 313
NG L G++++V
Sbjct: 340 NGADLDGRQIRVSE 353
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+F+ + E D L +F F A+V D+ TG S+ FGFVS+ + + AQ+AI+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 299 MNGYQLGGKKLKV 311
MNG L ++++
Sbjct: 205 MNGKWLSSRQIRC 217
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 251 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 310
+ L +AF F V A+V +K TG S+ +GFV++ S ++A SAIS MNG +L G +
Sbjct: 44 EHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNIS 103
Query: 311 VQHKRD 316
V +D
Sbjct: 104 VNVAKD 109
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 231 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 290
Q G G L++ ++P +L+ F G V+ ++ DK T S+ FGFV+ S E
Sbjct: 110 QASGEEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIE 168
Query: 291 AAQSAISMMNGYQLGGKKLKV 311
A+ A+ M N Q+GG+ +KV
Sbjct: 169 EAKEAMQMFNSSQIGGRTVKV 189
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 234 GPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQ 293
G G NL + FGDQ V+ AKV ++ TG S+ FGF+S++S E Q
Sbjct: 224 GNLGWNLTSQGLKDAFGDQP---------GVLGAKVIYERNTGRSRGFGFISFESAENVQ 274
Query: 294 SAISMMNGYQLGGKKLKV 311
SA++ MNG ++ G+ L++
Sbjct: 275 SALATMNGVEVEGRALRL 292
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P G+ +FI +P++ G++DL + + G + ++ D+ +G SK + FV++ + + AQ
Sbjct: 93 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 152
Query: 295 AISMMNGYQLGGKKLKV 311
AI ++ + GK ++
Sbjct: 153 AIEELHSKEFKGKTIRC 169
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 253 DLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQ 312
DL F+PFG V V +D+ T +S+ FGFVS+ S E AQ AI+ +NGY L+V+
Sbjct: 221 DLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 280
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
N+F+ + E D L ++F F A+V D+ TG S+ FGFVS+ + + AQ+AI+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 299 MNGYQLGGKKLKV 311
MNG + ++++
Sbjct: 209 MNGKWVSSRQIRC 221
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 242 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 301
I + EFG L AF +G V+ AK+ VD+ TG S+ F FV++ S E A +A+ ++G
Sbjct: 41 ISYSTDEFG---LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDG 96
Query: 302 YQLGGKKLKVQH 313
L G++++V +
Sbjct: 97 QDLHGRRIRVNY 108
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P G+ +FI +P++ G++DL + + G + ++ D+ +G SK + FV++ + + AQ
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 295 AISMMNGYQLGGKKLKV 311
AI ++ + GK ++
Sbjct: 173 AIEELHSKEFKGKTIRC 189
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P G+ +FI +P++ G++DL + + G + ++ D+ +G SK + FV++ + + AQ
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 295 AISMMNGYQLGGKKLKV 311
AI ++ + GK ++
Sbjct: 173 AIEELHSKEFKGKTIRC 189
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
LF+ ++ + LA AF+ G V+ A+V D TG S+ +GFV Y S ++A+ +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 300 NGYQLGGKKLKV 311
+G++L G+ ++V
Sbjct: 239 DGFELEGRAIRV 250
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 254 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKV 311
L AF FG+++ A V +D+ +G+S+ FGFV+YDS E A +A+ M +L G+ + V
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
F+ + D+ L AF +G VI +K+ D+ TG S+ FGFV++ +A + AI M
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 300 NGYQLGGKKLKVQH 313
NG L G+ + V
Sbjct: 70 NGQDLDGRSITVNE 83
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
F+ + D+ L AF +G VI +K+ D+ TG S+ FGFV++ +A + AI M
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 300 NGYQLGGKKLKVQH 313
NG L G+ + V
Sbjct: 70 NGQDLDGRSITVNE 83
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 232 VEGPPGAN----LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYD 287
V PP N L+I IP F + ++ F FG V +V +K TG SK FGF+ ++
Sbjct: 50 VTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFE 109
Query: 288 SPEAAQSAISMMNGYQLGGKKLKV 311
PE A+ A MN Y L LKV
Sbjct: 110 DPEVAEIAAGAMNDYLLMEHMLKV 133
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 236 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 295
P +++ ++P + + L F G+V+ A+V D+ TG S+ FGFV+ + A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 296 ISMMNGYQLGGKKLKVQHKRDNKPGKPY 323
IS ++G L G+ ++V + P + Y
Sbjct: 302 ISALDGQNLEGRAIRVNVAEERPPRRGY 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
A LF+ ++ + Q LA F+ G V A+V ++ T S+ FGFV+ S + A++A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 298 MMNGYQLGGKKLKV 311
N Y L G+ L V
Sbjct: 210 KFNRYDLNGRLLTV 223
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G+ +F+ + E D+DL AF FG ++ ++ +++ TG S+ FGF+++ A +I
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 297 SMMNGYQLGGKKLKVQH 313
M+G G + + V
Sbjct: 66 REMHGRDFGDRVISVNR 82
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
+ LFI + +Q L+ AF G+V+ A++ +D+ + SK FGFV++ S + AQ A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 298 MMNGYQLGGKKLKVQHKR 315
NG QL G+ + V + +
Sbjct: 94 EFNGQQLNGRTIFVDYAK 111
>AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr1:19103072-19104753 REVERSE
LENGTH=202
Length = 202
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+ + + +E ++D+ NAF FG + + + +D+ +G K + + Y+ E AQSAIS M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 300 NGYQL 304
NG +L
Sbjct: 157 NGAEL 161
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 241 FIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 300
F+ + Q+ ++DL + F FG VI +K+ D+ TG S+ FGFV+++ ++ AI +M+
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 251 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 310
D L AF +G V+ A V D+ T S+ FGFV+Y S A++A+S M+G +L G+++
Sbjct: 16 DDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVS 75
Query: 311 VQ 312
V+
Sbjct: 76 VK 77
>AT4G16280.1 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9210632 REVERSE LENGTH=505
Length = 505
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 27 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 74
+R + S+GC F+KY +K+ A+AA++ +NG + M G + PL+V++A+
Sbjct: 1 MRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 48
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
N+++ ++ + D DL F FG + SA V D G S+ FGFV+++ EAA +AI
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 298 MMNGYQLGGKKLKV 311
MNG + K+L V
Sbjct: 178 KMNGVVVDEKELHV 191
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G NL++ ++ + L F FG + S KV V + G+SK GFV + + E A A+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAM 280
Query: 297 SMMNGYQLGGK-------KLKVQHK 314
MNG +G K + K QHK
Sbjct: 281 LKMNGKMVGNKPIYVSLAQCKEQHK 305
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
ANL++ ++ L F PFG ++S KV + G SK FGFV +D+ ++A SA S
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARS 169
Query: 298 MMNGYQLGGKKLKV 311
++G + GKKL V
Sbjct: 170 ALHGSMVYGKKLFV 183
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
N+++ ++ + D +L F +G + SA V D G S+CFGFV++++PE A A+
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE 283
Query: 298 MMNGYQLGGKKL---KVQHKRDNK 318
+NG + K+ K Q K + +
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERE 307
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 237 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 296
G NL++ ++ D+ L F FG + S KV D +G SK GFV++ + A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVL 385
Query: 297 SMMNGYQLGGKKLKV---QHKRDNK 318
+ MNG +GGK L V Q K + +
Sbjct: 386 NEMNGKMVGGKPLYVALAQRKEERR 410
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
NLF+ ++ + ++ L AF G ++S KV D G S+ +GFV +D+ ++A++AI
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEK 193
Query: 299 MNGYQLGGKKLKV 311
+NG L K++ V
Sbjct: 194 LNGKVLNDKQIFV 206
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
LF+ + + ++ L +AF FG+++ A+V D+ +G SK FGFV+Y + E A+ A +
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 299 MNGYQLGG 306
MN L G
Sbjct: 95 MNAKFLDG 102
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
PP LF+ + D+DL F FG V+SA V D TG S C+ F+ +++ E+ +
Sbjct: 240 PPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQ 299
Query: 295 AISMMNGYQLGGKKLKV 311
A M+ + +++ V
Sbjct: 300 AYFKMDNALIDDRRIHV 316
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 238 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 297
A LF+ + DQ L F PFG++ A++ D T K FGF+++DS + A+ A+
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 298 MMNGYQLGGKKLKVQ 312
++G + G+ + V+
Sbjct: 67 SLDGKIVDGRLIFVE 81
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 235 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 294
P +F+ + Q + DL + F FG ++ K+ K +C GFV Y + A+
Sbjct: 275 PTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK-----RC-GFVQYANRACAEQ 328
Query: 295 AISMMNGYQLGGKKLKVQHKR--DNKPGKP 322
A+S++NG QLGG+ +++ R NK +P
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGRSPSNKQTQP 358
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
LFI + +Q L +AF FG V ++ DK +G S+ FGFV + A SA
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 299 MNGYQLGGKKLKVQHKRDNKPGKP 322
M+G L G+ L++ + G P
Sbjct: 102 MDGKGLLGRPLRISFALERVRGGP 125
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+F+ +IP + ++ L G V+S ++ D+ TG K +GF Y E A SA +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 300 NGYQLGGKKLKVQHKRDNK 318
Y++ G++L+V ++K
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 239 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 298
LF + E D L+ AF F AKV DK TG +K +GFVS+ +P +A+
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 299 MNGYQLGGKKLKVQ 312
MNG +G + +K++
Sbjct: 198 MNGKYVGNRPIKLR 211
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 240 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 299
+++ IP + + DL F +G ++ + DK TG SK F F++Y+ + A+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 300 NGYQLGGKKLKVQH 313
NG + G+ +KV H
Sbjct: 98 NGALVLGRTIKVDH 111
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 251 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 300
D+DL F FG VI +K+ D+ +G S+ FGFV++ +A + AI MN
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68