Miyakogusa Predicted Gene

Lj0g3v0173949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173949.1 Non Chatacterized Hit- tr|E9FU88|E9FU88_DAPPU
Putative uncharacterized protein OS=Daphnia pulex GN=D,44.55,6e-17,HAT
(Half-A-TPR) repeats,RNA-processing protein, HAT helix; RNA CLEAVAGE
STIMULATION FACTOR,NULL; Su,CUFF.10923.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17760.1 | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repe...   146   2e-36

>AT1G17760.1 | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr1:6110208-6116271
           REVERSE LENGTH=734
          Length = 734

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 77/84 (91%)

Query: 1   MTFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLTRLNDDQNIRALFERALSSLPPK 60
           M FC+DK+PK+AHN+FE GLK +M EPVYIL+YADFLTRLNDD+NIRALFERALS+LP +
Sbjct: 376 MAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTRLNDDRNIRALFERALSTLPVE 435

Query: 61  ESVEVWKKFTQFEQTYGDLASMLK 84
           +S EVWK+F QFEQTYGDLAS+LK
Sbjct: 436 DSAEVWKRFIQFEQTYGDLASILK 459