Miyakogusa Predicted Gene

Lj0g3v0173589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173589.1 CUFF.10895.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76920.1 | Symbols:  | F-box family protein | chr1:28892295-2...   127   1e-30

>AT1G76920.1 | Symbols:  | F-box family protein |
           chr1:28892295-28893419 FORWARD LENGTH=374
          Length = 374

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 83/118 (70%), Gaps = 16/118 (13%)

Query: 1   MVLTELAALYYSAVSDTDNSNNRWMKFSSNLPSKPRSPVLVGDSAFALCEVGS------- 53
           MVLTELAALYYS         N+W+KFSSNLPSKPRSPVL+  S FALC+VGS       
Sbjct: 168 MVLTELAALYYSGTVVA----NQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWK 223

Query: 54  ----RRVAPALAKKSWSRLERNEWGDVFDILKRPRLVRGAGD-RVLMVGGLKSSFSLN 106
               +     +   +W  LE++EWGD+FDI+KRPRL+RG GD ++LM+GGLKS+FSLN
Sbjct: 224 LFSCKLTNLTITHTNWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLN 281