Miyakogusa Predicted Gene

Lj0g3v0173489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173489.1 Non Chatacterized Hit- tr|K4BCC9|K4BCC9_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,60.94,5e-17,UPF0121,Uncharacterised protein family UPF0121;
seg,NULL; RNA POLYMERASE SIGMA FACTOR
RPO,NULL,NODE_43711_length_1065_cov_254.821594.path1.1
         (346 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02420.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   424   e-119

>AT3G02420.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: membrane;
           EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s:
           Uncharacterised protein family UPF0121
           (InterPro:IPR005344); Has 72 Blast hits to 71 proteins
           in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2;
           Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes -
           8 (source: NCBI BLink). | chr3:496179-498772 REVERSE
           LENGTH=348
          Length = 348

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 245/348 (70%), Gaps = 2/348 (0%)

Query: 1   MGEEREDPQKLKKLXXXXXXXXXXXRWPDYWANVLIPPNMASRSDVVSHYKRKFYQRHVD 60
           M E  ED Q+LKK+           RW DYW+N+LIPP+MASR +VV H+KRKFYQR++D
Sbjct: 1   MAEGGEDSQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYID 60

Query: 61  PDLVVEPMNFGXXXXXXX--XXXXXXXXXXXXXNDQVXXXXXXXXXXXXXXXXXXXPNST 118
           PDLVVEPM+                        N+QV                      +
Sbjct: 61  PDLVVEPMSTSSSSSQSARPTATSASSTASSNANEQVRSRNSGSVPRTSGPSATTGATPS 120

Query: 119 PLRWDRQTILFSVNAWXXXXXXXXXXXXXXRHLSQRAYRLSFMGTTCSSLYSLYSQYGKP 178
            +RWD QTI FSVNAW              ++LS RAYRLSFMGT CSSLYSLYS YG+P
Sbjct: 121 SMRWDEQTIQFSVNAWVFVIAVLAVLPLIPKNLSNRAYRLSFMGTACSSLYSLYSLYGRP 180

Query: 179 RAWNLQALQVYFQSIIAAKDFIYFIYCLTFVTSHLCLKFALIPIICWAFENVAKFLRRNF 238
           RAWN+Q LQVYFQSI+AAKDFIYFIYCLTFVTSHLCLKFALIPI+C A E VAKFLRRNF
Sbjct: 181 RAWNMQGLQVYFQSIVAAKDFIYFIYCLTFVTSHLCLKFALIPILCRALEQVAKFLRRNF 240

Query: 239 SRSTLYRKYLEEPCVWVESNNMTLNILTSHAEIGLGFLLVISLFSWQRNIIQTFMYWQLL 298
            RST+YRKYLE+PCVWVESN  TLNIL+S AEI +GFLL+ISL SWQRNIIQTFMYWQLL
Sbjct: 241 GRSTIYRKYLEDPCVWVESNTTTLNILSSQAEIAIGFLLIISLLSWQRNIIQTFMYWQLL 300

Query: 299 KLMYNVPVTAAYHQSVWAKIGRTVNPLIHSHAPFLKTPLSAVQRWWLR 346
           KLMY  PVTA YHQS W++IGRTV P+I  +APFL TP+SAVQRWW R
Sbjct: 301 KLMYQAPVTAGYHQSTWSRIGRTVTPIIQRYAPFLNTPVSAVQRWWFR 348