Miyakogusa Predicted Gene
- Lj0g3v0172629.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0172629.1 tr|G7JZQ5|G7JZQ5_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_5g073340 PE=4 SV=1,31.9,9e-19,no
description,NULL; RNI-like,NULL,gene.g13277.t1.1
(260 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53840.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 52 4e-07
AT4G09920.1 | Symbols: | FBD, F-box and Leucine Rich Repeat dom... 49 3e-06
AT5G44490.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich... 49 5e-06
AT4G10400.2 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 48 7e-06
AT4G10400.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 48 7e-06
AT1G06630.2 | Symbols: | F-box/RNI-like superfamily protein | c... 48 7e-06
AT1G51370.3 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 48 8e-06
AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 48 9e-06
AT1G06630.1 | Symbols: | F-box/RNI-like superfamily protein | c... 48 9e-06
AT1G06630.3 | Symbols: | F-box/RNI-like superfamily protein | c... 47 9e-06
AT1G51370.2 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 47 1e-05
>AT5G53840.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:21859148-21860672
REVERSE LENGTH=444
Length = 444
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 32 WVEVAKRHPIESLDIYTAGCA---TVSPSIFSSRTLVVLKLTSIGMVGNVLSVDLPSLKT 88
W+++ RH I+ +DI C+ + S+++ TLV LKL+ + MV NV V LP LK
Sbjct: 108 WIDLVTRHRIQHIDISVFTCSGFGVIPLSLYTCDTLVHLKLSRVTMV-NVEFVSLPCLKI 166
Query: 89 LHLSQVMFQKRDDFKKLLYGAPILQDL 115
L L V F K++ +P+L++L
Sbjct: 167 LDLDFVNFTNETTLDKIISCSPVLEEL 193
>AT4G09920.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr4:6224691-6225905
FORWARD LENGTH=316
Length = 316
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 32 WVEVAKRHPIESLDIYTAGCAT----VSPSIFSSRTLVVLKLTSIGMVGNVLSVDLPSLK 87
WV VA I L IY++ + S+++ ++LV+LKL ++ V LPSLK
Sbjct: 95 WVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLK 154
Query: 88 TLHLSQVMFQKRDDFKKLLYGAPILQDLYLAFVNSE 123
TL L V + K+ ++LL P+L+DL++ + +
Sbjct: 155 TLELKGVRYFKQGSLQRLLCNCPVLEDLFVLLLRCD 190
>AT5G44490.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich
Repeat domains containing protein |
chr5:17924035-17925843 FORWARD LENGTH=455
Length = 455
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 23 SDEAFTFHEWVEVAKRHPIESLDI----YTAGCATVSP-SIFSSRTLVVLKLTSIGMVGN 77
+D W+ H ++ LD+ + C V P +++ ++TL L+L + ++GN
Sbjct: 103 NDNKSCVTRWIGFVATHKLKHLDVECLLWKKKCLEVMPLTLYITQTLFYLRLHRV-LLGN 161
Query: 78 VLSVDLPSLKTLHLSQVMFQKRDDFKKLLYGAPILQDL 115
V S+ LP LKT+HL Q ++ + + P+L+DL
Sbjct: 162 VESISLPCLKTMHLEQNVYANETCLEFFISSCPVLEDL 199
>AT4G10400.2 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr4:6446335-6447715
REVERSE LENGTH=409
Length = 409
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 32 WVEVAKRHPIESLDIYTAGCAT----VSPSIFSSRTLVVLKLTSIGMVGNVLSVDLPSLK 87
WV VA I L IY++ + S+++ ++LV+LKL ++ V LPSLK
Sbjct: 95 WVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLK 154
Query: 88 TLHLSQVMFQKRDDFKKLLYGAPILQDLYLAFVNSEIPYTTGSKILPKLVKLHLDT 143
TL L V + K+ ++LL P+L+DL + + + + I+P L +L L T
Sbjct: 155 TLELKGVRYFKQGSLQRLLCNCPVLEDLVVNLSHHD-NMGKLTVIVPSLQRLSLST 209
>AT4G10400.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr4:6446335-6447715
REVERSE LENGTH=409
Length = 409
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 32 WVEVAKRHPIESLDIYTAGCAT----VSPSIFSSRTLVVLKLTSIGMVGNVLSVDLPSLK 87
WV VA I L IY++ + S+++ ++LV+LKL ++ V LPSLK
Sbjct: 95 WVVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLK 154
Query: 88 TLHLSQVMFQKRDDFKKLLYGAPILQDLYLAFVNSEIPYTTGSKILPKLVKLHLDT 143
TL L V + K+ ++LL P+L+DL + + + + I+P L +L L T
Sbjct: 155 TLELKGVRYFKQGSLQRLLCNCPVLEDLVVNLSHHD-NMGKLTVIVPSLQRLSLST 209
>AT1G06630.2 | Symbols: | F-box/RNI-like superfamily protein |
chr1:2028071-2029442 FORWARD LENGTH=403
Length = 403
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 9 HPIKNLVLYLNSTGSDE--AFTFHEWVE-VAKRHPIES-LDIYTAGCATVSPSIFSSRTL 64
+PI+ L L + DE W+ V R E L I G +SP + + +TL
Sbjct: 90 YPIRKLSLKCHVGRDDEQRKACVGRWISNVVGRGVSEVVLRINDRGLHFLSPQLLTCKTL 149
Query: 65 VVLKLTSIGMVGNVLS-VDLPSLKTLHLSQVMFQKRDDFKKL----LYGAPILQDLYLAF 119
V L L + +G + S V LPSLK L + V F DDF +L L G P+++ LYL
Sbjct: 150 VKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVFF---DDFGELSNVLLAGCPVVEALYLNQ 206
Query: 120 VNSEIPYTTGSKILPKL 136
+PYT S L +L
Sbjct: 207 NGESMPYTISSPTLKRL 223
>AT1G51370.3 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:19045615-19047141
FORWARD LENGTH=413
Length = 413
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 25 EAFTFHEWVEVAKRHPIESLDIYTAGCATVSPSIFSSRTLVVLKLTSIGMVGNVLSVDLP 84
+ + W++ A I+ LD++ + SI++ TLV L+L ++ N V LP
Sbjct: 102 DKYDLMSWIDAATTRRIQHLDVHCFHDNKIPLSIYTCTTLVHLRL-RWAVLTNPEFVSLP 160
Query: 85 SLKTLHLSQVMFQKRDDFKKLLYGAPILQDLYL 117
LK +H V + +KL+ G+P+L++L L
Sbjct: 161 CLKIMHFENVSYPNETTLQKLISGSPVLEELIL 193
>AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:19045615-19047141
FORWARD LENGTH=435
Length = 435
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 25 EAFTFHEWVEVAKRHPIESLDIYTAGCATVSPSIFSSRTLVVLKLTSIGMVGNVLSVDLP 84
+ + W++ A I+ LD++ + SI++ TLV L+L ++ N V LP
Sbjct: 102 DKYDLMSWIDAATTRRIQHLDVHCFHDNKIPLSIYTCTTLVHLRL-RWAVLTNPEFVSLP 160
Query: 85 SLKTLHLSQVMFQKRDDFKKLLYGAPILQDLYL 117
LK +H V + +KL+ G+P+L++L L
Sbjct: 161 CLKIMHFENVSYPNETTLQKLISGSPVLEELIL 193
>AT1G06630.1 | Symbols: | F-box/RNI-like superfamily protein |
chr1:2028071-2031173 FORWARD LENGTH=477
Length = 477
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 9 HPIKNLVLYLNSTGSDE--AFTFHEWVE-VAKRHPIES-LDIYTAGCATVSPSIFSSRTL 64
+PI+ L L + DE W+ V R E L I G +SP + + +TL
Sbjct: 90 YPIRKLSLKCHVGRDDEQRKACVGRWISNVVGRGVSEVVLRINDRGLHFLSPQLLTCKTL 149
Query: 65 VVLKLTSIGMVGNVLS-VDLPSLKTLHLSQVMFQKRDDFKKL----LYGAPILQDLYLAF 119
V L L + +G + S V LPSLK L + V F DDF +L L G P+++ LYL
Sbjct: 150 VKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVFF---DDFGELSNVLLAGCPVVEALYLNQ 206
Query: 120 VNSEIPYTTGSKILPKL 136
+PYT S L +L
Sbjct: 207 NGESMPYTISSPTLKRL 223
>AT1G06630.3 | Symbols: | F-box/RNI-like superfamily protein |
chr1:2028071-2030344 FORWARD LENGTH=461
Length = 461
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 9 HPIKNLVLYLNSTGSDE--AFTFHEWVE-VAKRHPIES-LDIYTAGCATVSPSIFSSRTL 64
+PI+ L L + DE W+ V R E L I G +SP + + +TL
Sbjct: 90 YPIRKLSLKCHVGRDDEQRKACVGRWISNVVGRGVSEVVLRINDRGLHFLSPQLLTCKTL 149
Query: 65 VVLKLTSIGMVGNVLS-VDLPSLKTLHLSQVMFQKRDDFKKL----LYGAPILQDLYLAF 119
V L L + +G + S V LPSLK L + V F DDF +L L G P+++ LYL
Sbjct: 150 VKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVFF---DDFGELSNVLLAGCPVVEALYLNQ 206
Query: 120 VNSEIPYTTGSKILPKL 136
+PYT S L +L
Sbjct: 207 NGESMPYTISSPTLKRL 223
>AT1G51370.2 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:19045615-19046748
FORWARD LENGTH=346
Length = 346
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 25 EAFTFHEWVEVAKRHPIESLDIYTAGCATVSPSIFSSRTLVVLKLTSIGMVGNVLSVDLP 84
+ + W++ A I+ LD++ + SI++ TLV L+L ++ N V LP
Sbjct: 102 DKYDLMSWIDAATTRRIQHLDVHCFHDNKIPLSIYTCTTLVHLRL-RWAVLTNPEFVSLP 160
Query: 85 SLKTLHLSQVMFQKRDDFKKLLYGAPILQDLYL 117
LK +H V + +KL+ G+P+L++L L
Sbjct: 161 CLKIMHFENVSYPNETTLQKLISGSPVLEELIL 193