Miyakogusa Predicted Gene

Lj0g3v0171359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0171359.1 Non Chatacterized Hit- tr|D8RQG8|D8RQG8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,45.05,3e-16,PAXNEB,Elongator complex protein 4; SUBFAMILY NOT
NAMED,NULL; PAX6 NEIGHBOR PROTEIN (PAXNEB),NULL,CUFF.10755.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11220.1 | Symbols: ELO1 | Paxneb protein-related | chr3:3513...   205   2e-53
AT3G11220.2 | Symbols: ELO1 | Paxneb protein-related | chr3:3513...   203   5e-53

>AT3G11220.1 | Symbols: ELO1 | Paxneb protein-related |
           chr3:3513830-3515990 REVERSE LENGTH=355
          Length = 355

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 129/188 (68%), Gaps = 15/188 (7%)

Query: 13  RNVSTVTS-QNPGLKHGPNGTMFISSGILDLDKILGGDFSLGSLVMIMEDAEAPHHMLLL 71
           RN+S V+S Q PGLK GPNGT FISSGI DLD+ILGG + LGSLVM+MED EAPHHM LL
Sbjct: 14  RNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLL 73

Query: 72  RNFMSQGLVHRQPLLYASASYNPKGFLGTLPCPGTSK-------DLGHEKDLRIAWQYKK 124
           R +MSQGLV+ QPLLYAS S +PKGFLGTLP P +SK       D    + LRIAWQY+K
Sbjct: 74  RTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRK 133

Query: 125 YFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNVYCLSFQDSPNRATLQDRCAGF 184
           Y  E Q N         DY NDFD+RKPL+R F  G  + C+S  DS + +  QD CA F
Sbjct: 134 YL-ENQKN------AIDDYSNDFDMRKPLERQFLSGRPIDCVSLLDSSDLSIAQDHCATF 186

Query: 185 LAQCSRCS 192
           L++  R S
Sbjct: 187 LSKFPRNS 194


>AT3G11220.2 | Symbols: ELO1 | Paxneb protein-related |
           chr3:3513830-3515990 REVERSE LENGTH=373
          Length = 373

 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/183 (59%), Positives = 127/183 (69%), Gaps = 15/183 (8%)

Query: 13  RNVSTVTS-QNPGLKHGPNGTMFISSGILDLDKILGGDFSLGSLVMIMEDAEAPHHMLLL 71
           RN+S V+S Q PGLK GPNGT FISSGI DLD+ILGG + LGSLVM+MED EAPHHM LL
Sbjct: 14  RNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLL 73

Query: 72  RNFMSQGLVHRQPLLYASASYNPKGFLGTLPCPGTSK-------DLGHEKDLRIAWQYKK 124
           R +MSQGLV+ QPLLYAS S +PKGFLGTLP P +SK       D    + LRIAWQY+K
Sbjct: 74  RTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRK 133

Query: 125 YFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNVYCLSFQDSPNRATLQDRCAGF 184
           Y  E Q N         DY NDFD+RKPL+R F  G  + C+S  DS + +  QD CA F
Sbjct: 134 YL-ENQKN------AIDDYSNDFDMRKPLERQFLSGRPIDCVSLLDSSDLSIAQDHCATF 186

Query: 185 LAQ 187
           L++
Sbjct: 187 LSK 189