Miyakogusa Predicted Gene

Lj0g3v0171049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0171049.1 tr|Q93KF0|Q93KF0_9FIRM Beta-galactosidase
OS=Caldicellulosiruptor lactoaceticus GN=lac PE=4
SV=1,52.56,2e-19,Glyco_hydro_2_N,Glycoside hydrolase, family 2,
N-terminal; SUBFAMILY NOT NAMED,NULL; BETA-GALACTOSID,CUFF.10735.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54440.1 | Symbols:  | glycoside hydrolase family 2 protein |...   251   1e-67
AT3G54440.2 | Symbols:  | glycoside hydrolase family 2 protein |...   251   1e-67
AT3G54440.3 | Symbols:  | glycoside hydrolase family 2 protein |...   242   7e-65

>AT3G54440.1 | Symbols:  | glycoside hydrolase family 2 protein |
           chr3:20148494-20157019 REVERSE LENGTH=1107
          Length = 1107

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 134/162 (82%)

Query: 8   SVAGPILLASQNGYKVWEDPSFIKWRKRDPHVSLHCHESVEGSLKFWYQRNKVDFLVSQS 67
           S+A  ++L S+NGY+VWED +  KWRKRDPHV+L CHESV+G+L++WYQRN VD  VS+S
Sbjct: 3   SLATQMILPSENGYRVWEDQTLFKWRKRDPHVTLRCHESVQGALRYWYQRNNVDLTVSKS 62

Query: 68  AVWNDDAVNGALDSAAFWVKDLPFVKSLSGYWKFFLASNPNNVPTEFYESEFHDSEWSAL 127
           AVWNDDAV  ALDSAAFWV  LPFVKSLSGYWKFFLA  P NVP +FY++ F DS+W+AL
Sbjct: 63  AVWNDDAVQAALDSAAFWVDGLPFVKSLSGYWKFFLAPKPANVPDKFYDAAFSDSDWNAL 122

Query: 128 PVPSNWQLHGFDRPIYTNTEYPFPLDPPSVPEENPTGWFRKF 169
            VPSNWQ HGFDRPIYTN  YPFP DPP VPE+NPTG +R +
Sbjct: 123 QVPSNWQCHGFDRPIYTNVVYPFPNDPPYVPEDNPTGCYRTY 164


>AT3G54440.2 | Symbols:  | glycoside hydrolase family 2 protein |
           chr3:20148494-20157019 REVERSE LENGTH=1108
          Length = 1108

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 134/162 (82%)

Query: 8   SVAGPILLASQNGYKVWEDPSFIKWRKRDPHVSLHCHESVEGSLKFWYQRNKVDFLVSQS 67
           S+A  ++L S+NGY+VWED +  KWRKRDPHV+L CHESV+G+L++WYQRN VD  VS+S
Sbjct: 3   SLATQMILPSENGYRVWEDQTLFKWRKRDPHVTLRCHESVQGALRYWYQRNNVDLTVSKS 62

Query: 68  AVWNDDAVNGALDSAAFWVKDLPFVKSLSGYWKFFLASNPNNVPTEFYESEFHDSEWSAL 127
           AVWNDDAV  ALDSAAFWV  LPFVKSLSGYWKFFLA  P NVP +FY++ F DS+W+AL
Sbjct: 63  AVWNDDAVQAALDSAAFWVDGLPFVKSLSGYWKFFLAPKPANVPDKFYDAAFSDSDWNAL 122

Query: 128 PVPSNWQLHGFDRPIYTNTEYPFPLDPPSVPEENPTGWFRKF 169
            VPSNWQ HGFDRPIYTN  YPFP DPP VPE+NPTG +R +
Sbjct: 123 QVPSNWQCHGFDRPIYTNVVYPFPNDPPYVPEDNPTGCYRTY 164


>AT3G54440.3 | Symbols:  | glycoside hydrolase family 2 protein |
           chr3:20148494-20157019 REVERSE LENGTH=1120
          Length = 1120

 Score =  242 bits (618), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 134/175 (76%), Gaps = 13/175 (7%)

Query: 8   SVAGPILLASQNGYKVWEDPSFIKWRKRDPHVSLHCHESVE-------------GSLKFW 54
           S+A  ++L S+NGY+VWED +  KWRKRDPHV+L CHESV+             G+L++W
Sbjct: 3   SLATQMILPSENGYRVWEDQTLFKWRKRDPHVTLRCHESVQVSQGRVKILCDCIGALRYW 62

Query: 55  YQRNKVDFLVSQSAVWNDDAVNGALDSAAFWVKDLPFVKSLSGYWKFFLASNPNNVPTEF 114
           YQRN VD  VS+SAVWNDDAV  ALDSAAFWV  LPFVKSLSGYWKFFLA  P NVP +F
Sbjct: 63  YQRNNVDLTVSKSAVWNDDAVQAALDSAAFWVDGLPFVKSLSGYWKFFLAPKPANVPDKF 122

Query: 115 YESEFHDSEWSALPVPSNWQLHGFDRPIYTNTEYPFPLDPPSVPEENPTGWFRKF 169
           Y++ F DS+W+AL VPSNWQ HGFDRPIYTN  YPFP DPP VPE+NPTG +R +
Sbjct: 123 YDAAFSDSDWNALQVPSNWQCHGFDRPIYTNVVYPFPNDPPYVPEDNPTGCYRTY 177