Miyakogusa Predicted Gene

Lj0g3v0170919.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170919.2 Non Chatacterized Hit- tr|B9SEY2|B9SEY2_RICCO
Polyglutamine binding protein, putative (Fragment)
OS=,68.18,2e-17,WW_DOMAIN_2,WW/Rsp5/WWP; no description,WW/Rsp5/WWP;
Domain with 2 conserved Trp (W) residues,WW/Rsp,CUFF.10721.2
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41020.1 | Symbols:  | WW domain-containing protein | chr2:17...    83   3e-17
AT2G41020.2 | Symbols:  | WW domain-containing protein | chr2:17...    83   3e-17

>AT2G41020.1 | Symbols:  | WW domain-containing protein |
           chr2:17117425-17120901 FORWARD LENGTH=463
          Length = 463

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query: 5   VEAKDPGSCACYYYNESTGKSQWEKPHEASSIEQSPSPLHLSENWVEALDETTGHKYYYN 64
           V+AKDP S A YYYN+ TG  QWE+P E S    S  P+   E W+E  DE +GHKY+YN
Sbjct: 199 VDAKDPASGATYYYNQHTGTCQWERPVELSYATSSAPPVLSKEEWIETFDEASGHKYFYN 258

Query: 65  TKTHVSQ 71
           T+THVSQ
Sbjct: 259 TRTHVSQ 265


>AT2G41020.2 | Symbols:  | WW domain-containing protein |
           chr2:17117425-17120012 FORWARD LENGTH=382
          Length = 382

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query: 5   VEAKDPGSCACYYYNESTGKSQWEKPHEASSIEQSPSPLHLSENWVEALDETTGHKYYYN 64
           V+AKDP S A YYYN+ TG  QWE+P E S    S  P+   E W+E  DE +GHKY+YN
Sbjct: 199 VDAKDPASGATYYYNQHTGTCQWERPVELSYATSSAPPVLSKEEWIETFDEASGHKYFYN 258

Query: 65  TKTHVSQ 71
           T+THVSQ
Sbjct: 259 TRTHVSQ 265