Miyakogusa Predicted Gene

Lj0g3v0170789.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170789.2 Non Chatacterized Hit- tr|K4DH16|K4DH16_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,58,2e-18,seg,NULL,CUFF.10708.2
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein ...   102   9e-23
AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein ...    80   6e-16
AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein ...    72   9e-14
AT1G55650.1 | Symbols:  | HMG (high mobility group) box protein ...    54   4e-08

>AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:28555287-28557465 REVERSE LENGTH=338
          Length = 338

 Score =  102 bits (254), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 70/130 (53%), Gaps = 8/130 (6%)

Query: 19  DFNLVEYSP---KPANNSPESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           +  LVEY+P   +  N  P S  +        GTIEGKFDCGYLV VKLGSE+L GVL+H
Sbjct: 152 EMALVEYTPPSIRYHNTHPPS--QGSSSFTAIGTIEGKFDCGYLVKVKLGSEILNGVLYH 209

Query: 76  XXXXXXXXXXXXQDVGAIVPF---NPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAK 132
                           A+VP+     +              DPNYPKPNRSGYNFFFA K
Sbjct: 210 SAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRSGYNFFFAEK 269

Query: 133 HTKLKELYPN 142
           H KLK LYPN
Sbjct: 270 HCKLKSLYPN 279


>AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:1376106-1378264 REVERSE LENGTH=448
          Length = 448

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 19  DFNLVEYSPKPANNSPESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHXXX 78
           +   + ++P+P  N+ E +  +  G    G I+GKF+ GYLV+V +GSE L+GVL+    
Sbjct: 151 ELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLKGVLYQLLP 210

Query: 79  XXXXXXXXXQDVGAIVP------FNPKAXX-------XXXXXXXXXXWDPNYPKPNRSGY 125
                    Q    ++P       NP+                     DP++PKPNRSGY
Sbjct: 211 QNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGY 270

Query: 126 NFFFAAKHTKLKELYP 141
           NFFFA +H +LK L+P
Sbjct: 271 NFFFAEQHARLKPLHP 286


>AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr3:4335721-4337804 REVERSE LENGTH=319
          Length = 319

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 30  ANNSP---ESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHXXXXXXXXXXX 86
           AN SP   E I E + G   +G I+GKFD GYLV++KLGS+ L+GVL+H           
Sbjct: 150 ANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQSQQT 209

Query: 87  XQDVGAIVPFNPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAKHTKLKELY 140
            +   AIV  + +              D   PK +RSGYNFFFA ++ +LK  Y
Sbjct: 210 METPSAIVQSSQRRHRKKSKLAVV---DTQKPKCHRSGYNFFFAEQYARLKPEY 260


>AT1G55650.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:20796340-20798481 FORWARD LENGTH=337
          Length = 337

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 21/110 (19%)

Query: 28  KPANNSPESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHXXXXXXXXXXXX 87
           K AN   +S  E K G    G I+GKF+ GYL+S K+GSE L+G+L+H            
Sbjct: 146 KSANRDKDS-QELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH------------ 192

Query: 88  QDVGAIVPFNPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAKHTKLK 137
                    +P+                  PK  R+GYNFF A +  ++K
Sbjct: 193 --------ISPETKRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIK 234