Miyakogusa Predicted Gene

Lj0g3v0169939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0169939.1 tr|B9H7E5|B9H7E5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_209887
PE=4,39.38,7e-17, ,CUFF.10655.1
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08320.1 | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-lik...    89   9e-19
AT4G08320.2 | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-lik...    80   4e-16

>AT4G08320.1 | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:5252853-5254990 FORWARD
           LENGTH=426
          Length = 426

 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 17/148 (11%)

Query: 2   YSAALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEEFQNQSARGPRSHGVPPP 61
           +  AL LDP+N  VKEN++ A  K+ +EQQ    +Q   ++  F  Q        G+P  
Sbjct: 267 FKKALLLDPHNESVKENIRVAEQKIREEQQRQRRSQ---NTSTFYTQEPEMGGGQGIPSQ 323

Query: 62  FTSMPFNPNNLASMFMNMAPNATNAHQGPHPQERE-----DANTSGADEPEIRAGSSNFS 116
           F SMP NP+ L SMFMNMA N      G H +  E     D   +GADEPEI  G  N +
Sbjct: 324 F-SMPVNPD-LMSMFMNMAGNT---FPGNHSRNNEGGAGGDGTRNGADEPEIHVGG-NIN 377

Query: 117 MNF---EQIPQDLSGAFQSMMEMFSGSV 141
           ++    EQ+P+DLSGA +SMM+MF GS+
Sbjct: 378 IDLGGTEQMPEDLSGALRSMMQMFGGSM 405


>AT4G08320.2 | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:5252853-5254990 FORWARD
           LENGTH=427
          Length = 427

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 84/148 (56%), Gaps = 16/148 (10%)

Query: 2   YSAALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEEFQNQSARGPRSHGVPPP 61
           +  AL LDP+N  VKEN++ A  K+ +EQQ    +Q   S+  F  Q        G+P  
Sbjct: 267 FKKALLLDPHNESVKENIRVAEQKIREEQQRQRRSQQNTST--FYTQEPEMGGGQGIPSQ 324

Query: 62  FTSMPFNPNNLASMFMNMAPNATNAHQGPHPQERE-----DANTSGADEPEIRAGSSNFS 116
           F SMP NP+ L SMFMNMA N      G H +  E     D   +GADEPEI  G  N +
Sbjct: 325 F-SMPVNPD-LMSMFMNMAGNT---FPGNHSRNNEGGAGGDGTRNGADEPEIHVGG-NIN 378

Query: 117 MNF---EQIPQDLSGAFQSMMEMFSGSV 141
           ++    EQ+P+DLSGA +SMM+MF GS+
Sbjct: 379 IDLGGTEQMPEDLSGALRSMMQMFGGSM 406