Miyakogusa Predicted Gene

Lj0g3v0169029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0169029.1 Non Chatacterized Hit- tr|I3T5T3|I3T5T3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,85.71,0.0000000002,seg,NULL,CUFF.10601.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09310.1 | Symbols:  | Protein of unknown function, DUF538 | ...    49   9e-07
AT1G56580.1 | Symbols: SVB | Protein of unknown function, DUF538...    48   1e-06

>AT1G09310.1 | Symbols:  | Protein of unknown function, DUF538 |
          chr1:3009109-3009648 FORWARD LENGTH=179
          Length = 179

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 1  MSLVTEEIRGRLEICHGDALCLVKSKDLLKEIALPNGL 38
          M LVTEE+R + E+  GD +C  K+K  LKEI++PNGL
Sbjct: 1  MGLVTEEVRAKAEMYTGDEICREKTKCFLKEISMPNGL 38


>AT1G56580.1 | Symbols: SVB | Protein of unknown function, DUF538
          | chr1:21198402-21198902 REVERSE LENGTH=166
          Length = 166

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 28/38 (73%)

Query: 1  MSLVTEEIRGRLEICHGDALCLVKSKDLLKEIALPNGL 38
          M LVT+E+R R E   GD +C  K+K+ LKE+++PNGL
Sbjct: 1  MGLVTDEVRARAEKYTGDEICREKTKEFLKEVSMPNGL 38