Miyakogusa Predicted Gene
- Lj0g3v0168359.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0168359.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,63.24,3e-18,dsRNA-binding domain-like,NULL;
DS_RBD,Double-stranded RNA-binding; Double-stranded RNA binding
moti,CUFF.10551.1
(165 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993... 62 1e-10
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993... 62 1e-10
AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:121... 60 6e-10
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:164... 58 3e-09
AT3G62800.3 | Symbols: | double-stranded-RNA-binding protein 4 ... 49 2e-06
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei... 49 2e-06
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei... 49 2e-06
>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
chr3:9930460-9931714 REVERSE LENGTH=359
Length = 359
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 1 MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
MYK +LQ L Q++ +SLP Y +REGPDH PRF ++V NG F S + + + A++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AMLAFIHFS 69
A +A S
Sbjct: 61 AEVALSALS 69
>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
chr3:9930460-9931714 REVERSE LENGTH=359
Length = 359
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 1 MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
MYK +LQ L Q++ +SLP Y +REGPDH PRF ++V NG F S + + + A++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AMLAFIHFS 69
A +A S
Sbjct: 61 AEVALSALS 69
>AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 |
chr2:12134098-12135915 REVERSE LENGTH=434
Length = 434
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 1 MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
MYK +LQ L Q++ ++LP Y REGPDH PRF +TV NG F S + + A++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AMLAF 65
A +A
Sbjct: 61 AEVAL 65
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
+YK LQ + Q+ LP Y T R G H P F+ TV + G+ F + P+ + K A+ +A
Sbjct: 87 VYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITF-TGDPAKNKKQAEKNA 145
Query: 61 AMLAFIHFSQ 70
AM A+ Q
Sbjct: 146 AMAAWSSLKQ 155
>AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 |
chr5:16438547-16439916 FORWARD LENGTH=393
Length = 393
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 1 MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
MYK +LQ L Q++ ++LP Y REGPDH PRF ++V NG F S + + + A++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AMLAF 65
A ++
Sbjct: 61 AEVSL 65
>AT3G62800.3 | Symbols: | double-stranded-RNA-binding protein 4 |
chr3:23225749-23227163 REVERSE LENGTH=329
Length = 329
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 YKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAA 61
YK LQ + QK S LP Y T+ GP H P F+STV G FS + + KLA+ AA
Sbjct: 83 YKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEE-AKTKKLAEMSAA 141
Query: 62 MLAFI 66
+AF+
Sbjct: 142 KVAFM 146
>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
| chr3:23225749-23227163 REVERSE LENGTH=355
Length = 355
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 YKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAA 61
YK LQ + QK S LP Y T+ GP H P F+STV G FS + + KLA+ AA
Sbjct: 83 YKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEE-AKTKKLAEMSAA 141
Query: 62 MLAFI 66
+AF+
Sbjct: 142 KVAFM 146
>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
| chr3:23225749-23227163 REVERSE LENGTH=355
Length = 355
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 YKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAA 61
YK LQ + QK S LP Y T+ GP H P F+STV G FS + + KLA+ AA
Sbjct: 83 YKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEE-AKTKKLAEMSAA 141
Query: 62 MLAFI 66
+AF+
Sbjct: 142 KVAFM 146