Miyakogusa Predicted Gene
- Lj0g3v0167769.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0167769.1 Non Chatacterized Hit- tr|I1JCF2|I1JCF2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20341
PE,76.69,0,seg,NULL; TPR-like,NULL; Tetratricopeptide
repeats,Tetratricopeptide repeat; TPR_1,Tetratricopeptide,CUFF.10502.1
(475 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 530 e-150
AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-l... 285 5e-77
AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 279 3e-75
AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR... 259 3e-69
AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 222 5e-58
AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 84 2e-16
AT5G22794.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 65 9e-11
>AT3G51280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19037229-19038781 FORWARD
LENGTH=430
Length = 430
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 288/452 (63%), Positives = 321/452 (71%), Gaps = 51/452 (11%)
Query: 26 LGVPRTRSESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKD 85
LG+ RT+SESFH HKVPVGD+PYVRAKNVQLVEKDPERAIPLFW AINAGDRVDSALKD
Sbjct: 20 LGISRTQSESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKD 79
Query: 86 MAILMKQQNRSEKAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYL 145
MAI+MKQQNR+E+AIEAIKSLR RCSDQAQESLDNILLDLYKRCGRLDDQI LL+HKL+L
Sbjct: 80 MAIVMKQQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFL 139
Query: 146 IQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYRRALSI 205
IQ+GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ+ N++EAE+AYRRALSI
Sbjct: 140 IQKGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSI 199
Query: 206 APDNNKMCNLGICLMKQGRVVEAKERLCRVKSAVHDGPRGSDSHLKAYERAQQMLKDLQS 265
APDNNKMCNLGICLMKQGR+ EAKE L RVK AV DGPRG DSHLKAYERAQQML DL S
Sbjct: 200 APDNNKMCNLGICLMKQGRIDEAKETLRRVKPAVVDGPRGVDSHLKAYERAQQMLNDLGS 259
Query: 266 ERMNIGGGDRVEQRRLFEAFLGSSSIWQPQPCKDHTSNSVK----TTQDEFADENINSNI 321
E M GG D+VEQRRLF+A GSSSIWQPQPC + T + + D + DEN+ ++
Sbjct: 260 EMMRRGGDDKVEQRRLFDAIFGSSSIWQPQPCSEQTVKAKPKPGLSNGDGYGDENVKMSV 319
Query: 322 MTKNHXXXXXXXXXXXXXLGNSLNVTAPPFYTSKPLVREPPNENHFAETLKRTRSGNAAV 381
+ N L V A PF++SK ++ E LKRTRS + +
Sbjct: 320 ---------------NPVVVNPLRVDAKPFFSSKLVISN-------NEKLKRTRSSSQGM 357
Query: 382 SMRVNDVGDF-NKVNMELGVPLPENKTRRLSSEDNNEKNKMVDLLPDNKDFEDXXXXXXX 440
M GD + N + RRLS EK LPDNKDFED
Sbjct: 358 GMLSGIGGDHEGETNT--------STRRRLSM----EKKATECGLPDNKDFEDAIMAAVL 405
Query: 441 XXXXXXXXNDKIFQKKTD-KRLKVFQDITLSL 471
+ K D KRLKVFQDITL L
Sbjct: 406 GT-----------ETKVDKKRLKVFQDITLCL 426
>AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19805576-19807699 REVERSE
LENGTH=306
Length = 306
Score = 285 bits (729), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 159/196 (81%)
Query: 34 ESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAILMKQQ 93
E FH+ HKVP GDTPYVRAK+ QL+EK+PE AI FW AIN GDRVDSALKDMA++MKQ
Sbjct: 25 ELFHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDRVDSALKDMAVVMKQL 84
Query: 94 NRSEKAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFN 153
+RSE+AIEAIKS R RCS +Q+SLDN+L+DLYK+CGR+++Q+ LL+ KL I QG AFN
Sbjct: 85 DRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGEAFN 144
Query: 154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYRRALSIAPDNNKMC 213
GK TKTARS GKKFQV+V+QE +RLLGNLGWA MQQ+ Y+ AE YR+A + PD NK C
Sbjct: 145 GKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKSC 204
Query: 214 NLGICLMKQGRVVEAK 229
NL +CL+KQGR E +
Sbjct: 205 NLAMCLIKQGRFEEGR 220
>AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1336564-1337767 REVERSE
LENGTH=303
Length = 303
Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/248 (57%), Positives = 182/248 (73%), Gaps = 5/248 (2%)
Query: 31 TRSESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAILM 90
+ + ++++ HK+P GD+PYVRAK+VQLVEKD E AI LFW AI A DRVDSALKDMA+LM
Sbjct: 15 SSAAAYNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLM 74
Query: 91 KQQNRSEKAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGL 150
KQQNR+E+AI+AI+S R CS QAQESLDN+L+DLYK+CGR+++Q+ LL+ KL++I QG
Sbjct: 75 KQQNRAEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGE 134
Query: 151 AFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYRRALSIAPDNN 210
AFNGK TKTARS GKKFQV+VE+E +R+LGNLGWA MQ +Y AE YR+A I PD N
Sbjct: 135 AFNGKPTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDAN 194
Query: 211 KMCNLGICLMKQGRVVEAKERLCRVKSAVHDGPRGS-DSHLKAYERAQQMLKDLQSERMN 269
K CNL CL+KQG+ EA+ L R + + GS D L A R Q++L +L+ +
Sbjct: 195 KACNLCTCLIKQGKHDEARSILFR--DVLMENKEGSGDPRLMA--RVQELLSELKPQEEE 250
Query: 270 IGGGDRVE 277
VE
Sbjct: 251 AAASVSVE 258
>AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:11184103-11185844
REVERSE LENGTH=450
Length = 450
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/252 (49%), Positives = 173/252 (68%), Gaps = 16/252 (6%)
Query: 32 RSESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAILMK 91
R + FHI HKVP GD+PYVRAK+ QL++KDP RAI LFW AINAGDRVDSALKDMA++MK
Sbjct: 47 RRDPFHIVHKVPSGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSALKDMAVVMK 106
Query: 92 QQNRSEKAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLA 151
Q RS++ IEAIKS R CS ++Q+S+DN+LL+LYK+ GR++++ LL HKL ++QG+
Sbjct: 107 QLGRSDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQGMG 166
Query: 152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYR----------- 200
F G+ ++ R QGK +++EQE R+LGNLGW +Q NY AE+ YR
Sbjct: 167 FGGRVSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIPNID 226
Query: 201 -----RALSIAPDNNKMCNLGICLMKQGRVVEAKERLCRVKSAVHDGPRGSDSHLKAYER 255
RAL + D NK+CNL ICLM+ R+ EAK L V+ + + G + K+Y+R
Sbjct: 227 YCLVMRALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDVRDSPAESECGDEPFAKSYDR 286
Query: 256 AQQMLKDLQSER 267
A +ML +++S++
Sbjct: 287 AVEMLAEIESKK 298
>AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:17857325-17859056 FORWARD
LENGTH=469
Length = 469
Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 156/229 (68%), Gaps = 5/229 (2%)
Query: 34 ESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAILMKQQ 93
ESF +V GD+PYVRAK+ QLV KDP RAI LFWAAINAGDRVDSALKDM +++KQ
Sbjct: 46 ESF----RVRTGDSPYVRAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQL 101
Query: 94 NRSEKAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFN 153
NR ++ IEAIKS R C ++Q+S+DN+LL+LY + GR+ + LL HKL ++Q +
Sbjct: 102 NRFDEGIEAIKSFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYG 161
Query: 154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYRRALSIAPDNNKMC 213
G+ RS ++ ++EQE R+LGNL W +Q NY AE+ YR ALS+ PDNNK+C
Sbjct: 162 GRIKIAKRSHEEQNNKTIEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLC 221
Query: 214 NLGICLMKQGRVVEAKERLCRVKSAVHDGPRGSDSHLKAYERAQQMLKD 262
NL ICL++ R EAK L VK ++ + + ++ K++ERA +ML +
Sbjct: 222 NLAICLIRMERTHEAKSLLEDVKQSLGNQWK-NEPFCKSFERATEMLAE 269
>AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT1G04770.1); Has 146 Blast
hits to 146 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:7608242-7611591 FORWARD LENGTH=237
Length = 237
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 55/67 (82%)
Query: 113 QAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172
QAQESL+N+L+DLYK+ GR ++Q+ LL+ +L++I Q AFNGK K ARS G+KFQV+VE
Sbjct: 71 QAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVE 130
Query: 173 QEATRLL 179
+E +R+L
Sbjct: 131 KETSRML 137
>AT5G22794.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT1G04770.1); Has 132 Blast
hits to 132 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:7608242-7610818 FORWARD LENGTH=201
Length = 201
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 7/67 (10%)
Query: 113 QAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172
QAQESL+N + GR ++Q+ LL+ +L++I Q AFNGK K ARS G+KFQV+VE
Sbjct: 71 QAQESLEN-------KGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVE 123
Query: 173 QEATRLL 179
+E +R+L
Sbjct: 124 KETSRML 130