Miyakogusa Predicted Gene

Lj0g3v0167659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0167659.1 Non Chatacterized Hit- tr|D8SQP6|D8SQP6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,28.57,7e-17,coiled-coil,NULL,CUFF.10493.1
         (242 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09050.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   239   2e-63

>AT3G09050.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 120
           Blast hits to 120 proteins in 47 species: Archae - 4;
           Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44;
           Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
           | chr3:2764860-2765907 FORWARD LENGTH=258
          Length = 258

 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/247 (53%), Positives = 169/247 (68%), Gaps = 12/247 (4%)

Query: 6   TLHPSFLPTNTTYSHLHTRNYTLCLCNSNESDSQPPEP------KGDVQSQELLAQIAML 59
           TL P+F        H  +R   LCL  S +  S           +GD + QELLA+IAM+
Sbjct: 11  TLTPNFHVLFNASRHSLSRPQFLCLSKSGDGTSDSDSDPDPPKPEGDTRRQELLARIAMI 70

Query: 60  QTQKVRLTDYLDERSEYLTQFGEEAKAEFDKVGEDALKGLDEASDRITANIESQMLAFEE 119
           QT KVRLTD+LDERSEYLT+F EEA AEFDKVGEDA+K LDEAS RI  NIES+M AFEE
Sbjct: 71  QTSKVRLTDFLDERSEYLTKFAEEANAEFDKVGEDAMKDLDEASTRILENIESKMQAFEE 130

Query: 120 STELNKQEIQESESKITEFEGQMEKDRNEGLFFKNLGQQPPVDQAKAKEEVEKIKDVARE 179
           S  LN+ EI+E+++K+ EFE +++ DRNEGLFFK+L  + PVD+ +A+EE EKI++V +E
Sbjct: 131 SAGLNRLEIEENDNKLAEFEEKIQVDRNEGLFFKSLRDKKPVDREQAREETEKIQEVTKE 190

Query: 180 KDGGKTRKNIYLFFMGLLAYGIVGSIASSSGTDWRKVSLLGAVLVALFYQFINEQN---- 235
             G K+R+NIYL  +G++   I  S  SS   DWRKV++LGA+LV L  QF+ EQ     
Sbjct: 191 SAGSKSRRNIYLGLIGIVVLAIADSFVSSP--DWRKVAILGAILVPLLTQFVYEQTLLSE 248

Query: 236 KDKKKED 242
            DK KE+
Sbjct: 249 ADKGKEN 255