Miyakogusa Predicted Gene

Lj0g3v0167619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0167619.1 Non Chatacterized Hit- tr|F6HVA5|F6HVA5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,63.3,0,no
description,NULL; DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2,NULL;
DNA-DIRECTED RNA POLYMERASE I S,gene.g12858.t1.1
         (287 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:...   352   2e-97
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA p...   111   5e-25

>AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 |
           chr5:18247416-18257713 REVERSE LENGTH=1161
          Length = 1161

 Score =  352 bits (903), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 211/332 (63%), Gaps = 101/332 (30%)

Query: 1   MERKGMTQVLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ----VSCN-PVGEAC 55
           M RKGMTQVL RLSFIG +G +T++SPQFEKSRKVSGPR+LQPSQ      C+ P GE+C
Sbjct: 442 MHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESC 501

Query: 56  GLVKNLALMTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGG 115
           GLVKNLALMTHVTTDEEE PL+++                                    
Sbjct: 502 GLVKNLALMTHVTTDEEEGPLVAM------------------------------------ 525

Query: 116 GCYYLGVEDMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRRAGKIGEFVS 175
            CY LGV D+E LS EELHTPDSFLVI NGLILGKH RP+ F  ++R+LRRAGKIGEFVS
Sbjct: 526 -CYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVS 584

Query: 176 VYVNEKQ-----------------------------------DGVRTFDDFLRDGLIEYL 200
           V+ NEKQ                                   DGVRTFDDF+RDGLIEYL
Sbjct: 585 VFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYL 644

Query: 201 DVNEENNALIALYEGDATSE-----------TTHIEIEPFTILGVIAGLIPYPHHNQSPR 249
           DVNEENNALIALYE D T+E           TTHIEIEPFTILGV+AGLIPYPHHNQSPR
Sbjct: 645 DVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPR 704

Query: 250 NTYQVVSQSLPSLFLYKCAMGKQAMGNIAYNQ 281
           NTYQ             CAMGKQAMGNIAYNQ
Sbjct: 705 NTYQ-------------CAMGKQAMGNIAYNQ 723


>AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA
           polymerase family protein | chr4:11535684-11542200
           REVERSE LENGTH=1188
          Length = 1188

 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 133/328 (40%), Gaps = 107/328 (32%)

Query: 3   RKGMTQVLQRLSFIGFLGQMTRVSPQFEKSRKVSGPRALQPSQ--VSC---NPVGEACGL 57
           R G++QVL RL++   L  + R++    +  K++ PR L  SQ  + C    P G+ACGL
Sbjct: 467 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 526

Query: 58  VKNLALMTHVTTDEEEAPLISLISGAKSITNLTDLYNQLLGLRRSPEQILFLGVWRGGGC 117
           VKNLALM ++T      P++                              FL  W     
Sbjct: 527 VKNLALMVYITVGSAAYPILE-----------------------------FLEEW----- 552

Query: 118 YYLGVEDMEYLSGEELHTPDSFLVIFNGLILGKHRRPRGFVTAMRKLRRAGKIGEFVSVY 177
              G E+ E +S   +  P +  +  NG+ +G HR P   V  +R+LRR   +   V V 
Sbjct: 553 ---GTENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVV 607

Query: 178 VNEKQDGVRTFDDFLR---------------------------------------DGLIE 198
            + +   +R + D+ R                                        G IE
Sbjct: 608 RDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIE 667

Query: 199 YLDVNEENNALIALYEGDA-----------TSETTHIEIEPFTILGVIAGLIPYPHHNQS 247
           Y+D  EE   +I++   D            T   TH EI P  ILGV A +IP+P HNQS
Sbjct: 668 YIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQS 727

Query: 248 PRNTYQVVSQSLPSLFLYKCAMGKQAMG 275
           PRNTYQ              AMGKQAMG
Sbjct: 728 PRNTYQ-------------SAMGKQAMG 742