Miyakogusa Predicted Gene
- Lj0g3v0167589.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0167589.1 tr|G7L5X8|G7L5X8_MEDTR Transcription factor
bHLH106 OS=Medicago truncatula GN=MTR_7g089400 PE=4 SV=1,78.29,0,helix
loop helix domain,Helix-loop-helix domain; seg,NULL; HLH,
helix-loop-helix DNA-binding
domain,,NODE_35338_length_1159_cov_45.207073.path2.1
(242 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41130.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 221 4e-58
AT3G56770.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 204 6e-53
AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 153 8e-38
AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic helix-loop-h... 149 2e-36
AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 125 3e-29
AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 84 1e-16
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 58 4e-09
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 1e-08
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 56 2e-08
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 3e-08
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 55 4e-08
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b... 54 9e-08
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 1e-07
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 1e-07
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 1e-07
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 53 2e-07
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 52 3e-07
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 52 4e-07
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 6e-07
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 7e-07
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 7e-07
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 7e-07
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 51 8e-07
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 1e-06
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL... 50 1e-06
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 1e-06
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHL... 50 2e-06
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 49 2e-06
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 49 2e-06
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 49 2e-06
AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 | ch... 49 3e-06
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 4e-06
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 48 6e-06
>AT2G41130.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17143360-17144686 FORWARD
LENGTH=253
Length = 253
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 144/171 (84%), Gaps = 6/171 (3%)
Query: 49 YYPLEVSEITEAAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASL 108
YYPL +S I E QDR LAA+RNHKEAE+RRRERINSHL+ LR +L CNSKTDKA+L
Sbjct: 47 YYPLAISGIGETMA--QDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATL 104
Query: 109 LAKVVQRVKELKQQTSEITNLE--TVPSETDEISVLSSGG-AGDGRLIFKASLCCEDRSD 165
LAKVVQRV+ELKQQT E ++ + +PSETDEISVL G + DG +IFKASLCCEDRSD
Sbjct: 105 LAKVVQRVRELKQQTLETSDSDQTLLPSETDEISVLHFGDYSNDGHIIFKASLCCEDRSD 164
Query: 166 LIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAAEKD-HSIESIHFLQN 215
L+PDL+EILKSL++KTL+AEM T+GGRTR+VL+VAA+K+ H +ES+HFLQN
Sbjct: 165 LLPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFLQN 215
>AT3G56770.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21029202-21030618 REVERSE
LENGTH=230
Length = 230
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/159 (64%), Positives = 130/159 (81%), Gaps = 5/159 (3%)
Query: 61 APSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELK 120
A +D+ LA++RNHKEAE++RR RINSHL+ LR LL CNSKTDK++LLAKVVQRVKELK
Sbjct: 35 ATVYEDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELK 94
Query: 121 QQTSEITNLETVPSETDEISVLS---SGGAGDGRLIFKASLCCEDRSDLIPDLIEILKSL 177
QQT EIT+ ET+PSETDEISVL+ D R+IFK S CCEDR +L+ DL+E LKSL
Sbjct: 95 QQTLEITD-ETIPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSL 153
Query: 178 HLKTLKAEMATLGGRTRNVLIVAAEKD-HSIESIHFLQN 215
++TL A+M T+GGRTRNVL+VAA+K+ H ++S++FLQN
Sbjct: 154 QMETLFADMTTVGGRTRNVLVVAADKEHHGVQSVNFLQN 192
>AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25861289-25862882 FORWARD
LENGTH=368
Length = 368
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 108/135 (80%), Gaps = 2/135 (1%)
Query: 67 RNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEI 126
+ LAA ++H EAE+RRRERIN+HL LR++LP +KTDKASLLA+V+Q VKELK++TS I
Sbjct: 170 KALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVI 229
Query: 127 TNLETVPSETDEISVLSS--GGAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKA 184
+ VP+E+DE++V + GDGR + KASLCCEDRSDL+PD+I+ LK++ LKTLKA
Sbjct: 230 SETNLVPTESDELTVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKA 289
Query: 185 EMATLGGRTRNVLIV 199
E+ T+GGR +NVL V
Sbjct: 290 EITTVGGRVKNVLFV 304
>AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic
helix-loop-helix 32 | chr3:9369598-9371096 FORWARD
LENGTH=344
Length = 344
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 109/136 (80%)
Query: 69 LAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITN 128
LAA ++H EAE+RRRERIN+HL LR++LP +KTDKASLLA+V+Q +KELK+QTS+IT+
Sbjct: 130 LAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITD 189
Query: 129 LETVPSETDEISVLSSGGAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMAT 188
VP+E D+++V SS +G L+ +AS CC+DR+DL+ D+I LKSL L+TLKAE+AT
Sbjct: 190 TYQVPTECDDLTVDSSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIAT 249
Query: 189 LGGRTRNVLIVAAEKD 204
+GGR +N+L ++ E D
Sbjct: 250 VGGRVKNILFLSREYD 265
>AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:16791098-16792027 FORWARD
LENGTH=254
Length = 254
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 91/126 (72%), Gaps = 4/126 (3%)
Query: 73 RNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITNLETV 132
R+H+ AEKRRR+RINSHL ALR L+P + K DKA+LLA V+++VKELKQ+ +E + +
Sbjct: 65 RSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDL 124
Query: 133 PSETDEISV----LSSGGAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMAT 188
P+E DE++V +S + +IFKAS CCED+ + I ++I +L L L+T++AE+ +
Sbjct: 125 PTEADEVTVQPETISDFESNTNTIIFKASFCCEDQPEAISEIIRVLTKLQLETIQAEIIS 184
Query: 189 LGGRTR 194
+GGR R
Sbjct: 185 VGGRMR 190
>AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17876535-17882569 FORWARD
LENGTH=1513
Length = 1513
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 57 ITEAAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRV 116
+T+ + + +AA + H +AE+RRR RINS LRT+LP K DKAS+L + V+
Sbjct: 1336 VTKPKSKTESKEVAA-KKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETVRYF 1394
Query: 117 KELKQQTSEITNLETVPSETDEISVLSSGGAGD-GRLIFKASLCCEDRSDLIPDLIEILK 175
ELK+ +I T PS D + + D R++F C DR L+ ++ E +K
Sbjct: 1395 NELKKMVQDIP---TTPSLEDNLRLDHCNNNRDLARVVF----SCSDREGLMSEVAESMK 1447
Query: 176 SLHLKTLKAEMATLGGRTRNVLIV 199
++ K ++AE+ T+GGRT+ L V
Sbjct: 1448 AVKAKAVRAEIMTVGGRTKCALFV 1471
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 54 VSEITEAAPSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLL 109
VS + E P ++ R A R NH EAE++RRE++N ALR+++P SK DKASLL
Sbjct: 371 VSVVDEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLL 430
Query: 110 AKVVQRVKELKQQ 122
+ +KEL+++
Sbjct: 431 GDAISYIKELQEK 443
>AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362230-363639 REVERSE
LENGTH=423
Length = 423
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 56 EITEAAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQR 115
E T A + ++++ A+ +H EAEK+RRE++N ALR ++P S+ DKASLL+ V
Sbjct: 231 ETTRVAAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSY 290
Query: 116 VKELKQQTSEITNLET 131
++ LK S+I +LET
Sbjct: 291 IESLK---SKIDDLET 303
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 52 LEVSEITEAA----PSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKT 103
LE S + E A P ++ R A R NH EAE++RRE++N ALR ++P SK
Sbjct: 422 LEASVVKEVAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKM 481
Query: 104 DKASLLAKVVQRVKELKQQ 122
DKASLL + + ELK +
Sbjct: 482 DKASLLGDAIAYINELKSK 500
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154872 FORWARD
LENGTH=247
Length = 247
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 40/179 (22%)
Query: 60 AAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKEL 119
AA S +N+ + RN RR+++N L ALR+++P +K DKAS++ + ++ L
Sbjct: 47 AASSPASKNIVSERN-------RRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL 99
Query: 120 ----KQQTSEITNLETVP-----------------------------SETDEISVLSSGG 146
K+ +EI LE+ P S T I VL
Sbjct: 100 QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKV 159
Query: 147 AGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAAEKDH 205
G S+ C R+D + L E+ +SL+LK L + + + G + + + A+++
Sbjct: 160 TFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEADEEE 218
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 54 VSEITEAAPSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLL 109
V E E P ++ R A R NH EAE++RRE++N +LR ++P SK DKASLL
Sbjct: 391 VVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLL 450
Query: 110 AKVVQRVKELKQQTSEI-TNLETVPSETDEISVLSSGGAGDG 150
+ + ELK + + ++ E + + D +S + G G G
Sbjct: 451 GDAISYINELKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCG 492
>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:7331721-7334077
FORWARD LENGTH=571
Length = 571
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 78 AEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITNLETVPSETD 137
AE+RRR+++N L ALR+L+P +K D+AS+L + VKEL+ + E+ + SET+
Sbjct: 318 AERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETE 377
Query: 138 EISVLSSGGAG-DGRLI--FKASLCC 160
+ S GG +G ++ F L C
Sbjct: 378 DGSNRPQGGMSLNGTVVTGFHPGLSC 403
>AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154801 FORWARD
LENGTH=264
Length = 264
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 40/165 (24%)
Query: 60 AAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKEL 119
AA S +N+ + RN RR+++N L ALR+++P +K DKAS++ + ++ L
Sbjct: 48 AASSPASKNIVSERN-------RRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL 100
Query: 120 ----KQQTSEITNLETVP-----------------------------SETDEISVLSSGG 146
K+ +EI LE+ P S T I VL
Sbjct: 101 QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKV 160
Query: 147 AGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGG 191
G S+ C R+D + L E+ +SL+LK L + + + G
Sbjct: 161 TFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSG 205
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23153293 FORWARD
LENGTH=226
Length = 226
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 40/165 (24%)
Query: 60 AAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKEL 119
AA S +N+ + RN RR+++N L ALR+++P +K DKAS++ + ++ L
Sbjct: 48 AASSPASKNIVSERN-------RRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL 100
Query: 120 ----KQQTSEITNLETVP-----------------------------SETDEISVLSSGG 146
K+ +EI LE+ P S T I VL
Sbjct: 101 QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKV 160
Query: 147 AGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGG 191
G S+ C R+D + L E+ +SL+LK L + + + G
Sbjct: 161 TFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSG 205
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154556 FORWARD
LENGTH=219
Length = 219
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 40/165 (24%)
Query: 60 AAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKEL 119
AA S +N+ + RN RR+++N L ALR+++P +K DKAS++ + ++ L
Sbjct: 48 AASSPASKNIVSERN-------RRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL 100
Query: 120 ----KQQTSEITNLETVP-----------------------------SETDEISVLSSGG 146
K+ +EI LE+ P S T I VL
Sbjct: 101 QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKV 160
Query: 147 AGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGG 191
G S+ C R+D + L E+ +SL+LK L + + + G
Sbjct: 161 TFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSG 205
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 42/55 (76%)
Query: 75 HKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITNL 129
H ++E++RR++IN + L+ L+P +SKTDKAS+L +V++ +K+L+ Q S ++ +
Sbjct: 218 HNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMMSRM 272
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 59 EAAPSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQ 114
E P ++ R A R NH EAE++RRE++N +LR ++P SK DKASLL +
Sbjct: 397 EKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAIS 456
Query: 115 RVKELKQQ 122
+ ELK +
Sbjct: 457 YISELKSK 464
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 75 HKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEIT 127
H +EKRRR RIN + AL++L+P ++KTDKAS+L + ++ +K+L+ Q +T
Sbjct: 202 HNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLT 254
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 59 EAAPSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQ 114
E P ++ R A R NH EAE++RRE++N ALR ++P SK DKASLLA +
Sbjct: 301 EQKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAIT 360
Query: 115 RVKELKQQ 122
+ +++++
Sbjct: 361 YITDMQKK 368
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 62 PSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVK 117
P ++ R A R NH EAE++RRE++N ALR+++P SK DKASLL V +
Sbjct: 417 PRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYIN 476
Query: 118 EL 119
EL
Sbjct: 477 EL 478
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 62 PSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVK 117
P ++ R A R NH EAE++RRE++N ALR+++P SK DKASLL V +
Sbjct: 417 PRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYIN 476
Query: 118 EL 119
EL
Sbjct: 477 EL 478
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 62 PSQQDRNLAAMR----NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVK 117
P ++ R A R NH EAE++RRE++N ALR+++P SK DKASLL V +
Sbjct: 417 PRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYIN 476
Query: 118 EL 119
EL
Sbjct: 477 EL 478
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 58 TEAAPSQQDRNLAAMRN-----HKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKV 112
T AAP Q + A R H AE+ RRERI + AL+ L+P +KTDKAS+L ++
Sbjct: 127 TVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEI 186
Query: 113 VQRVKELKQQ 122
+ VK L+ Q
Sbjct: 187 IDYVKFLQLQ 196
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 75 HKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQ 122
HK +E+RRR++IN + AL+ LLP +KTD++S+L V++ VK L+ Q
Sbjct: 282 HKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQ 329
>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384758-4386392
FORWARD LENGTH=450
Length = 450
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 78 AEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEI-TNLETVPSET 136
AE+RRR+++N L LR+++P SK D+AS+L + +KEL Q+ +++ T LE+ P +
Sbjct: 271 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSS 330
Query: 137 DEISVLS 143
+ L+
Sbjct: 331 SSLHPLT 337
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 75 HKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQ 122
HK +E+RRR++IN + AL+ LLP +KTD++S+L V++ VK L+ Q
Sbjct: 282 HKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQ 329
>AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182067-6186261
FORWARD LENGTH=518
Length = 518
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 20/120 (16%)
Query: 74 NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITN----- 128
+H AE+RRRE++N LR+++P +K DK S+L + V L+++ E+ N
Sbjct: 363 SHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQ 422
Query: 129 -------LETVPSETDEISVLSSGGAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKT 181
+ SE E+S++ + + R CE R L+ D++++L L ++T
Sbjct: 423 QHKRTRTCKRKTSEEVEVSIIENDVLLEMR--------CEYRDGLLLDILQVLHELGIET 474
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 78 AEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITN-LETVP 133
AE+RRR+++N L LR+++P SK D+AS+L + +KEL Q+ +++ N LE+ P
Sbjct: 311 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTP 367
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 78 AEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITN-LETVP 133
AE+RRR+++N L LR+++P SK D+AS+L + +KEL Q+ +++ N LE+ P
Sbjct: 311 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTP 367
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 78 AEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITN-LETVP 133
AE+RRR+++N L LR+++P SK D+AS+L + +KEL Q+ +++ N LE+ P
Sbjct: 311 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTP 367
>AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 |
chr5:19002719-19004254 FORWARD LENGTH=511
Length = 511
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 74 NHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEI 126
NH EAE+ RRE++N ALR ++P SK DK SLL V + ELK + +
Sbjct: 343 NHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENV 395
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=225
Length = 225
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 78 AEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQ----TSEITNLETVP 133
+E+ RR+++N L ALR+++P SK DKAS++ + ++EL Q +EI LE+
Sbjct: 58 SERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRS 117
Query: 134 SETDE------------ISVLSSGGAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKT 181
+ + I VL G + C + + + L ++L+SL+L
Sbjct: 118 TLLENPMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNI 177
Query: 182 LKAEMATLGGRTRNVLIVAAEKDHS 206
L ++ R L + A+++ S
Sbjct: 178 LTTNFSSFTSRLSTTLFLQADEEES 202
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 67 RNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQ 122
RN+ A + H +EK+RR +IN + AL+ L+P ++KTDKAS+L + ++ +K+L+ Q
Sbjct: 91 RNIDA-QFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQ 145