Miyakogusa Predicted Gene

Lj0g3v0167499.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0167499.1 tr|G8A0I2|G8A0I2_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_103s0066 PE=4 SV=1,46.22,1.4013e-45,FBA_1,F-box
associated domain, type 1; F_box_assoc_1: F-box protein interaction
domain,F-box associa,CUFF.10486.1
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    57   2e-08
AT3G21410.1 | Symbols:  | F-box and associated interaction domai...    53   2e-07
AT3G17490.1 | Symbols:  | F-box and associated interaction domai...    51   8e-07
AT5G47300.1 | Symbols:  | F-box and associated interaction domai...    50   1e-06
AT3G08750.1 | Symbols:  | F-box and associated interaction domai...    50   1e-06
AT5G62830.1 | Symbols:  | F-box associated ubiquitination effect...    50   1e-06
AT3G10430.1 | Symbols:  | F-box and associated interaction domai...    50   2e-06
AT3G16880.1 | Symbols:  | F-box and associated interaction domai...    48   5e-06
AT3G22350.1 | Symbols:  | F-box and associated interaction domai...    47   1e-05

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 32/216 (14%)

Query: 3   SSLGFGYDPVRDDFKLIRLLWYYPPSGCDGNGDGWQGPLPDPLPFNYGPGWEIYSLRSNS 62
            + GFG+D + DD+KL++L+                    D L  +      +YSL+++S
Sbjct: 212 QTYGFGFDGLTDDYKLVKLV----------------ATSEDILDAS------VYSLKADS 249

Query: 63  WRKL-DMPFVHDVPLIDCDNDMCMNGVCHWFGIVEEYRNETHYLASFNLSNEVFCITPLP 121
           WR++ ++ + H+       + +  NG  HW  +  E R+    + +F++  E F   P+P
Sbjct: 250 WRRICNLNYEHNDG--SYTSGVHFNGAIHW--VFTESRHNQRVVVAFDIQTEEFREMPVP 305

Query: 122 ---LDLTSRWVRKSLVALSESIAVILKNEETTSFHIWILGELGVKESWTKLFIVGPMPGV 178
               D + R+    + +L+  + V+    +     IW++ E G  +SW+++ I   +   
Sbjct: 306 DEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHD-DIWVMSEYGEAKSWSRIRI-NLLYRS 363

Query: 179 ALPIGVGKNGDIFFRKENGELALFDLSTNMLEEIAI 214
             P+   KN +    + +G+L L++  TN    + I
Sbjct: 364 MKPLCSTKNDEEVLLELDGDLVLYNFETNASSNLGI 399


>AT3G21410.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:7536719-7537951
           REVERSE LENGTH=410
          Length = 410

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 26/177 (14%)

Query: 3   SSLGFGYDPV-RDDFKLIRLLWYYPPSGCDGNGDGWQGPLPDPLPFNYGPGWEIYSLRSN 61
           S  G GYD + RD +K++R +          NG   +    +    +Y P  +IY L+SN
Sbjct: 161 SCYGIGYDGLSRDSYKILRFV----------NGVFTKNEYANT--GSYKPEVDIYELKSN 208

Query: 62  SWRKLDMPFVHDVPLIDCDNDMCMNGVCHWFGIVEEYRNETHYLASFNLSNEVFCITPLP 121
           SW+   +     V ++ C   + + G  +W  I +  R    ++ SFN S E F   PL 
Sbjct: 209 SWKTFKVSLDWHV-VLRCKG-LSLKGNMYW--IAKWNRKPDIFIQSFNFSTETF--EPL- 261

Query: 122 LDLTSRWVRKSLVALS----ESIAVILKNEETTSFHIWILGEL--GVKESWTKLFIV 172
             L  R+   ++VALS    ++++++ +++ET+   +W+  ++  GV   WTKLF V
Sbjct: 262 CSLPVRYDVHNVVALSAFKGDNLSLLHQSKETSKIDVWVTNKVKNGVSILWTKLFSV 318


>AT3G17490.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:5984827-5985993
           FORWARD LENGTH=388
          Length = 388

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 53  WEIYSLRSNSWRKLDMPFVHDVPLIDCDNDMCMNGVCHWFGIVEEYRNETHY-LASFNLS 111
           +EI+   SNSWR LD   V+   +I+    + + G  +WF  +     +THY +  F+ S
Sbjct: 176 YEIFEFSSNSWRVLD---VNPNCIIE-GRSVSVKGNSYWFATI----TKTHYFIRRFDFS 227

Query: 112 NEVFCITPLPLDLTSRWVRKSLVAL-SESIAVILKNEETTSFHIWILGELGVKE--SWTK 168
           +E F   PLP  +      ++L A   E ++V+ ++ +T    IW+  ++      SW+K
Sbjct: 228 SETFQKLPLPFHIFDYNDSRALSAFREEQLSVLHQSFDTEKMDIWVTNKIDETTDWSWSK 287

Query: 169 LFIVGPMPGVALPIGV 184
            F V  +  +  PI +
Sbjct: 288 FFTVRLINRLDYPISM 303


>AT5G47300.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr5:19198125-19199375
           FORWARD LENGTH=416
          Length = 416

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 50  GPGWE-----IYSLRSNSWRKLDMPFVHDVPLID-CDNDMCMNGVCHWFGIVEEYRNETH 103
           G G+E     IY + S SWR LD+    D  L    D  + + G  +WF   E+ +N + 
Sbjct: 201 GYGYENQELAIYEINSQSWRFLDV--TRDCILERYTDYGVSLKGHTYWFASDEKEKNLSV 258

Query: 104 YLASFNLSNEVFCITPLPLDLTSRWVRKSLVALSESIAVILKNEETTSFHIWILGELGVK 163
           +L SF+ + E F    LP            V   E +AV+L+ E T+   IW+   +G  
Sbjct: 259 FLVSFDYTTERFRRLRLPYQCPDYNTASLSVVREEKLAVLLQRENTSRTEIWVTSRIGET 318

Query: 164 E--SWTKLFIV 172
           +  SW+ +  V
Sbjct: 319 KVVSWSMVLAV 329


>AT3G08750.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:2656716-2657825
           REVERSE LENGTH=369
          Length = 369

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 34/164 (20%)

Query: 5   LGFGYDP--VRDDFKLIRLLWYYPPSGCDGNGDGWQGPLPDPLPFNYGPGWEIYSLRSNS 62
           +G GYD    RD++K+++LL   P    D + D               P  EIY  +S+S
Sbjct: 138 VGIGYDDNVSRDNYKILKLLGRLPK---DDDSD---------------PNCEIYEFKSDS 179

Query: 63  WRKLDMPFVHDVPLIDCDNDMCMNGVCHWFGIVEEYRNETHYLASFNLSNEVF---CITP 119
           W+ L   F  D+  I C+N + + G  +W       + E   +  F+ S E F   C+ P
Sbjct: 180 WKTLVAKFDWDID-IRCNNGVSVKGKMYWIA----KKKEDFTIIRFDFSTETFKEICVCP 234

Query: 120 LPLDLTSRWVRKSLVALSESIAVILKNEETTSFHIWILGELGVK 163
             L      V +      + ++++L+ EE+    +W+  +L  K
Sbjct: 235 YTL------VTRLGCFDGDRLSLLLQGEESQGIEVWMTNKLSDK 272


>AT5G62830.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr5:25226168-25226782 REVERSE
           LENGTH=204
          Length = 204

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 54  EIYSLRSNSWRKLDMPFVHDVPLIDCDNDMC--MNGVCHWFGIVEEYRNETHYLASFNLS 111
           E+Y   SNSWR LD+  + D   + CD   C  ++G  +W   +E+  N+ + L SF+ S
Sbjct: 2   EMYEFTSNSWRNLDV-IIPDQAYLKCDGHACASLSGNTYWVSWIEKGDNDDYSLLSFDFS 60

Query: 112 NEVFCITPLPLDLTSRWVRKSLVALS----ESIAVILKNEETTSFHIWILGELGVK-ESW 166
            E F    L      +  R   +ALS    E +++  ++ +T    IW+  E+     SW
Sbjct: 61  TERF--QRLCAHFHHQPCRVDTIALSVVREEHLSLFYQSRQTLKVEIWVTVEIETTFVSW 118

Query: 167 TKLFIV 172
           +K   +
Sbjct: 119 SKFLTL 124


>AT3G10430.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:3242750-3243862
           REVERSE LENGTH=370
          Length = 370

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 52/205 (25%)

Query: 5   LGFGYDPV-RDDFKLIRLLWYYPPSGCDGNGDGWQGPLPDPLPFNYGPGWEIYSLRSNSW 63
           LGFGYD   RD++K++R  +     G D + + +             P  +IY   S SW
Sbjct: 138 LGFGYDKTFRDNYKILRFTYL----GDDDDDESY-------------PKCQIYEFNSGSW 180

Query: 64  RKLDMPFVHDVPLIDCDND-MCMNGVCHWFGIVEEYRNETHYLASFNLSNEVF---CITP 119
           R ++  F  +   ID + D + +NG  +W     E + + +++ SF+ S E F   C +P
Sbjct: 181 RSIEAKFDGE---IDVEVDGVSVNGSMYWI----ELQEKKNFILSFDFSKETFNRICDSP 233

Query: 120 LPLDLTSRWVRKSLVALSESIAVILKNEETTSFHIWILGELGVK-ESWTKLFIVG----- 173
           L  D     +++      + ++++ +NE T   H+ +  +L  +  S+++ F V      
Sbjct: 234 LYWD-----IKRLGCFNGDRLSLLQQNEATREIHVSVTNKLSDEVVSFSRYFSVTLPDIP 288

Query: 174 --------PMPGVALPIGVGKNGDI 190
                   P+PG      +GKN +I
Sbjct: 289 LFRSIDILPLPGCF----IGKNRNI 309


>AT3G16880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:5766733-5767830
           FORWARD LENGTH=365
          Length = 365

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 20/166 (12%)

Query: 53  WEIYSLRSNSWRKLDMPFVHDVPLIDCDNDMCMNGVCHWFGIVEEYRNETHYLASFNLSN 112
           +EIY L SNSWR LD+           D  +  N   +      +YR +  +L SF+ + 
Sbjct: 172 YEIYELDSNSWRALDVNSNWATAFYKMDVSVKGNSYTY-----TDYRGD--FLISFDFTT 224

Query: 113 EVFCITPLPLDLTSRWVRKSLVALS----ESIAVILKNEETTSFHIWILGELGVKE-SWT 167
           E F  T LPL   SR     +VALS    E +AV+L     +   IWI  ++     SW 
Sbjct: 225 ERFGPT-LPLPFHSRC--GDIVALSSVREEKLAVLLHRCNISRMEIWITNKIEPNNVSWG 281

Query: 168 KLFIVGPMPGVALPIGVGKNGDIFFRKENGELALFDLSTNMLEEIA 213
           KLF+   M  + +  G+      F  +E   + +FD    M   I 
Sbjct: 282 KLFLTVDMKPLIIDDGI-----FFIDEEKKVVVVFDKDKEMRNRIT 322


>AT3G22350.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:7901905-7903041
           FORWARD LENGTH=378
          Length = 378

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 53  WEIYSLRSNSWRKLDMPFVHDVPLIDCDNDMCMNGVCHWFGIVEEYRNETHYLASFNLSN 112
           +EIY  RS+SW+ LD       P +     + + G  +WFG      N+  +L SF+ + 
Sbjct: 177 FEIYDFRSDSWKVLDDVPDDRFPPVSV---VSLKGNTYWFG-----SNKKDFLRSFDFTT 228

Query: 113 EVFCITPLPLDLTSRWVRKSLVALSESIAVILKNEETTSFHIWILGELGVKES---WTKL 169
           E F    LP      ++  S+V   E    +L+  ET+   I++  ++G +E+   W+K 
Sbjct: 229 ERFNHIGLPPSRDHGFMALSVVG--EEQLSVLQEIETSKMEIFVTNKVGTEEAALLWSKS 286

Query: 170 FIVGPMPGVALPIGVGKNGDIF 191
           FIV       LPIG G   ++F
Sbjct: 287 FIVD------LPIG-GHCSEVF 301