Miyakogusa Predicted Gene

Lj0g3v0167399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0167399.1 tr|Q8W106|Q8W106_ARATH AT3g27930/K24A2_2
OS=Arabidopsis thaliana GN=At3g27930 PE=2
SV=1,58.75,3e-19,seg,NULL,CUFF.10507.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   104   3e-23
AT3G27930.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    92   2e-19

>AT3G27930.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 14 growth stages; Has 35 Blast hits to 35
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:10369593-10372318 REVERSE LENGTH=425
          Length = 425

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 100 VSGPLDHKPEESITGNALFRWQSDVNDPHTFMDLYVSTSDPILRMRSCAYYPRYGFGAFG 159
           VSG +D + E    GNA FRWQSDV+DPHTF+DL VSTS+P+L MRS AYYP+YG GAF 
Sbjct: 80  VSGAVDGRVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNPVLLMRSSAYYPKYGIGAFA 139

Query: 160 VFPLLLR-KREFSEDYGLMGL 179
           V+PL+ +   + SE+Y +MGL
Sbjct: 140 VYPLISKITGKSSEEYRIMGL 160


>AT3G27930.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 14 growth stages. |
           chr3:10369593-10372318 REVERSE LENGTH=420
          Length = 420

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 58/81 (71%), Gaps = 6/81 (7%)

Query: 100 VSGPLDHKPEESITGNALFRWQSDVNDPHTFMDLYVSTSDPILRMRSCAYYPRYGFGAFG 159
           VSG +D + E    GNA FRWQSDV+DPHTF+DL VSTS+P     S AYYP+YG GAF 
Sbjct: 80  VSGAVDGRVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNP-----SSAYYPKYGIGAFA 134

Query: 160 VFPLLLR-KREFSEDYGLMGL 179
           V+PL+ +   + SE+Y +MGL
Sbjct: 135 VYPLISKITGKSSEEYRIMGL 155