Miyakogusa Predicted Gene

Lj0g3v0166159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0166159.1 tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit
processome component OS=Glycine max PE=3 SV=1,87.13,0,HIV-1 REV
BINDING PROTEIN 2, 3,Ribosomal RNA assembly KRR1; no description,NULL;
Eukaryotic type KH-,NODE_55418_length_1398_cov_52.560085.path2.1
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08420.1 | Symbols:  | RNA-binding KH domain-containing prote...   376   e-104

>AT5G08420.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:2713555-2716064 FORWARD LENGTH=391
          Length = 391

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/210 (83%), Positives = 194/210 (92%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NIDRW +EKFDP+WN  GM E S+FSTLFPQYREKYLQE WP V+S+LKE+GV+C+LNLV
Sbjct: 35  NIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVACKLNLV 94

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKIL+DEVQCDIIKI  +VRNKE
Sbjct: 95  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKE 154

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQ LVGPNSSTLKALEILT CYILVQG+TV+AMG FKGLKQ+RRIVE+C+ N +H
Sbjct: 155 RFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNIMH 214

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLP 245
           PVY+IK LMMKKELEKDPALA E+WDRFLP
Sbjct: 215 PVYHIKTLMMKKELEKDPALANESWDRFLP 244