Miyakogusa Predicted Gene

Lj0g3v0166089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0166089.1 Non Chatacterized Hit- tr|C4R705|C4R705_PICPG
Putative uncharacterized protein OS=Pichia pastoris
(s,37.31,8e-19,seg,NULL; OPA3,Optic atrophy 3-like; SUBFAMILY NOT
NAMED,NULL; OPTIC ATROPHY 3 PROTEIN (OPA3),Optic ,CUFF.10411.1
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58150.1 | Symbols:  | Optic atrophy 3 protein (OPA3) | chr3:...   164   4e-41
AT1G28510.1 | Symbols:  | Optic atrophy 3 protein (OPA3) | chr1:...   161   2e-40

>AT3G58150.1 | Symbols:  | Optic atrophy 3 protein (OPA3) |
           chr3:21532947-21534072 REVERSE LENGTH=194
          Length = 194

 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 89/98 (90%)

Query: 2   VVLPLVKLGTLALKTACKPIANRLKKEAGYHPKFRTFIISIAQANHRFSTRMQRRIYGNT 61
           +VLPL+KLGTLAL+T CKPIAN+LKKEAG +PKFR FII+IAQANHRF+T++QRR  G  
Sbjct: 12  MVLPLLKLGTLALRTICKPIANQLKKEAGVNPKFRQFIINIAQANHRFTTKLQRRASGRI 71

Query: 62  TDAAIRPLNEEKAVQAAADMLGELFVFTVAGAAVIFEV 99
           TDA IRPLNEE+AVQAAAD+LGELF FTVAGAA+++EV
Sbjct: 72  TDAVIRPLNEERAVQAAADLLGELFAFTVAGAALVYEV 109


>AT1G28510.1 | Symbols:  | Optic atrophy 3 protein (OPA3) |
           chr1:10024036-10025939 FORWARD LENGTH=171
          Length = 171

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 104/156 (66%)

Query: 2   VVLPLVKLGTLALKTACKPIANRLKKEAGYHPKFRTFIISIAQANHRFSTRMQRRIYGNT 61
           +VLPL+KLGTLA+KT  KP+A++LK +A  HPKFR  II+ AQ NHR +T+MQRRIYG+ 
Sbjct: 1   MVLPLMKLGTLAVKTISKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHA 60

Query: 62  TDAAIRPLNEEKAVQAAADMLGELFVFTVAGAAVIFEVXXXXXXXXXXXXXXXXXXXXMK 121
           TD  IRPL+EEKAVQAA D++GE+F+F V GA V+FEV                    ++
Sbjct: 61  TDVEIRPLDEEKAVQAAVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEELR 120

Query: 122 TRNEEMARKIXXXXXXXXXXDQLARARGLAGVLNFR 157
            ++EE+ +++          +QLA+ARGL+G+   +
Sbjct: 121 IKDEELEKQVADLKSKLEELEQLAKARGLSGIFQLK 156