Miyakogusa Predicted Gene

Lj0g3v0165929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165929.1 Non Chatacterized Hit- tr|J3LLB6|J3LLB6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G1,43.75,2e-18,coiled-coil,NULL; seg,NULL; Remorin_C,Remorin,
C-terminal,CUFF.10399.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13920.1 | Symbols:  | Remorin family protein | chr1:4758188-...   111   6e-25
AT1G69325.1 | Symbols:  | Remorin family protein | chr1:26063205...    68   9e-12
AT5G61280.1 | Symbols:  | Remorin family protein | chr5:24643625...    61   8e-10
AT1G67590.1 | Symbols:  | Remorin family protein | chr1:25333137...    48   1e-05

>AT1G13920.1 | Symbols:  | Remorin family protein |
           chr1:4758188-4759754 FORWARD LENGTH=345
          Length = 345

 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 77/106 (72%)

Query: 212 ADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRAKAMRKYQDK 271
           ADAW + EL  IK RYEKL   ID WE +KR KARRKL+  EQS+ E++R + ++++++ 
Sbjct: 240 ADAWEKAELSKIKARYEKLNRKIDLWEAKKREKARRKLDISEQSELEQRRKRGLQRFRED 299

Query: 272 MKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLPGVCSCF 317
            +YI++IA GARAQ+ +  +++E + KEKA  IR+TGKLPG   CF
Sbjct: 300 TEYIEQIAAGARAQAEKDRQSKEFKVKEKAGVIRSTGKLPGNACCF 345


>AT1G69325.1 | Symbols:  | Remorin family protein |
           chr1:26063205-26063736 FORWARD LENGTH=120
          Length = 120

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 203 PRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRA 262
            +P    A  D W   E+   +++YEKL E I SWE +KR KA+RKL++ E+S  E+ + 
Sbjct: 9   AKPEHMAAVVDQWKETEISKSRKKYEKLSEKIVSWEDKKRKKAKRKLHRTERS-VEKTKL 67

Query: 263 KAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLPGVC 314
           KA ++++D+ + I+ I   ARA ++E    EEL+ KEKAN +RTTG+ P  C
Sbjct: 68  KATQRFRDENERIEIIVASARAHAYESRIKEELKVKEKANLMRTTGRKPSTC 119


>AT5G61280.1 | Symbols:  | Remorin family protein |
           chr5:24643625-24644910 REVERSE LENGTH=263
          Length = 263

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 206 GTSEAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRAKAM 265
            ++ +KAD+W + ++K I+ RYEK+   I  WE  +++ A   + K  +S+ E+++    
Sbjct: 150 ASASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKR-KSELEKRKGINN 208

Query: 266 RKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLPGVCSCF 317
           + Y+ K+  I  IA GA+ Q  E+ R++E +   K  K+  TGK+P    CF
Sbjct: 209 QHYKSKLARIQLIADGAKKQLEEKRRSKEAQVHGKVKKMSRTGKVPNNYFCF 260


>AT1G67590.1 | Symbols:  | Remorin family protein |
           chr1:25333137-25334472 REVERSE LENGTH=347
          Length = 347

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 209 EAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRAKAMRKY 268
           EA+A AW   E      RY++    I +WE  ++ KA  ++ K E    ER +A+A  K 
Sbjct: 230 EARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEMEMKKME-VKAERMKARAEEKL 288

Query: 269 QDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLP 311
            +K+     IA   RA +  +L  + ++  EKA+ IR +G LP
Sbjct: 289 ANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGHLP 331