Miyakogusa Predicted Gene

Lj0g3v0165759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165759.1 tr|I1J6W0|I1J6W0_SOYBN tRNA-dihydrouridine
synthase OS=Glycine max GN=Gma.11078 PE=3 SV=1,83.02,0,no
description,Aldolase-type TIM barrel; FMN-linked oxidoreductases,NULL;
Dus,tRNA-dihydrouridine sy,CUFF.10390.1
         (324 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49640.1 | Symbols:  | Aldolase-type TIM barrel family protei...   486   e-138
AT3G49640.2 | Symbols:  | Aldolase-type TIM barrel family protei...   405   e-113
AT5G67220.1 | Symbols:  | FMN-linked oxidoreductases superfamily...   127   1e-29
AT4G38890.1 | Symbols:  | FMN-linked oxidoreductases superfamily...   100   2e-21
AT3G63510.2 | Symbols:  | FMN-linked oxidoreductases superfamily...    56   3e-08
AT3G63510.1 | Symbols:  | FMN-linked oxidoreductases superfamily...    56   3e-08

>AT3G49640.1 | Symbols:  | Aldolase-type TIM barrel family protein |
           chr3:18400480-18402809 REVERSE LENGTH=329
          Length = 329

 Score =  486 bits (1252), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 227/317 (71%), Positives = 274/317 (86%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           MDY+NK+VLAPMVRVGTL  R+LA +YGAD  YGEEI+DHK++KCERR+N   G+++FVE
Sbjct: 1   MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 60

Query: 61  KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGM 120
           KGT++VVF TCD+EK RVVFQMGTSDAVRAL A+++VCNDVA IDINMGCPKAFS+ GGM
Sbjct: 61  KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 120

Query: 121 GAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR 180
           GAALLSKPELIHDIL TLKRNL +PVTCKIRLL    DTVELA+RIEK GV ALAVHGR+
Sbjct: 121 GAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRK 180

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
           + DRPRDPAKW EIADVV+ALSIPVIANGDV EYDDF RIK+ATGA+SVMVARGA+WNAS
Sbjct: 181 IADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNAS 240

Query: 241 IFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAIVKSESSA 300
           IFSP+G+  +E VK++Y+RK  LW+ND++STK+T++EM+  +S L LPE K+I K+++  
Sbjct: 241 IFSPKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKSINKADTLE 300

Query: 301 DLAELYGMGDYYRLVKS 317
           DLA LY + DY+  VK+
Sbjct: 301 DLARLYDLEDYFWTVKN 317


>AT3G49640.2 | Symbols:  | Aldolase-type TIM barrel family protein |
           chr3:18400480-18402593 REVERSE LENGTH=290
          Length = 290

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/264 (71%), Positives = 229/264 (86%)

Query: 54  GSTDFVEKGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKA 113
           G+++FVEKGT++VVF TCD+EK RVVFQMGTSDAVRAL A+++VCNDVA IDINMGCPKA
Sbjct: 15  GTSEFVEKGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKA 74

Query: 114 FSLSGGMGAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSA 173
           FS+ GGMGAALLSKPELIHDIL TLKRNL +PVTCKIRLL    DTVELA+RIEK GV A
Sbjct: 75  FSIQGGMGAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPA 134

Query: 174 LAVHGRRVLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVAR 233
           LAVHGR++ DRPRDPAKW EIADVV+ALSIPVIANGDV EYDDF RIK+ATGA+SVMVAR
Sbjct: 135 LAVHGRKIADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVAR 194

Query: 234 GALWNASIFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAI 293
           GA+WNASIFSP+G+  +E VK++Y+RK  LW+ND++STK+T++EM+  +S L LPE K+I
Sbjct: 195 GAMWNASIFSPKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKSI 254

Query: 294 VKSESSADLAELYGMGDYYRLVKS 317
            K+++  DLA LY + DY+  VK+
Sbjct: 255 NKADTLEDLARLYDLEDYFWTVKN 278


>AT5G67220.1 | Symbols:  | FMN-linked oxidoreductases superfamily
           protein | chr5:26820276-26821926 REVERSE LENGTH=423
          Length = 423

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 122/243 (50%), Gaps = 20/243 (8%)

Query: 4   RNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGT 63
           R K ++APMV    LP RLL  +YGA   Y   +      + E+  N+            
Sbjct: 87  RPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQ------------ 134

Query: 64  ESVVFRTCDQEKDRVVF-QMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGMGA 122
               F TC  ++DR +F Q   +D    L AA+ V      +DIN+GCP+  +  G  GA
Sbjct: 135 ---EFTTC--KEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGA 189

Query: 123 ALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR-- 180
            L+    L+  ++  L +NL++PV+CKIR+     DT++ AK +E  G S LAVHGR   
Sbjct: 190 FLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRD 249

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
             D  +  A W+ I +V +A+ IPV+ANG+V   +D       TG   V+ A   L N +
Sbjct: 250 EKDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPA 309

Query: 241 IFS 243
            F+
Sbjct: 310 AFA 312


>AT4G38890.1 | Symbols:  | FMN-linked oxidoreductases superfamily
           protein | chr4:18135909-18139100 REVERSE LENGTH=691
          Length = 691

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 137/309 (44%), Gaps = 38/309 (12%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           +D+R+K+ LAP+  VG LP R L    GAD   GE      +  C   +         + 
Sbjct: 334 IDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGE------MAMCTNLLQGQASEWALLR 387

Query: 61  KGTESVVF--RTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSG 118
           + +   +F  + C    D V          R +      C  V  IDINMGCP    ++ 
Sbjct: 388 RHSSEDLFGVQICGSYPDTVS---------RVVELIDRECT-VDFIDINMGCPIDMVVNK 437

Query: 119 GMGAALLSKPELIHDILTTLKRNLSIPVTCKIR--LLSERHDTVELAKRIEKTGVSALAV 176
             G+ALL+KP  + +I+      +  P+T K+R      ++    L   I   G +A+ +
Sbjct: 438 SAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTI 497

Query: 177 HGRRVLDRPRDPAKWAEIADVV--SALSIPVIANGDVFEYDDFQRIKS-ATGASSVMVAR 233
           HGR    R    A W  I      +  ++ VI NGDV+ Y D+ + KS     SS M+AR
Sbjct: 498 HGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIAR 557

Query: 234 GALWNASIFSPEGEVSYEVV---KREYIRKCFL------WDND---IRSTKHTLREMLT- 280
           GAL    IF+   E  +  +   +R  I K F+      W +D   + +T+H L E L+ 
Sbjct: 558 GALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWLSY 617

Query: 281 --RYSNLGL 287
             RY  +GL
Sbjct: 618 TFRYIPVGL 626


>AT3G63510.2 | Symbols:  | FMN-linked oxidoreductases superfamily
           protein | chr3:23450615-23452682 FORWARD LENGTH=386
          Length = 386

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)

Query: 19  PLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGTESVVFRTCDQEKDRV 78
           PLRL      +D  Y    +   I K      E+I +   V + T    F     ++  +
Sbjct: 20  PLRLPIFLLPSDNHY--RTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPI 77

Query: 79  VFQMGTSDAVRALAAAQLVCNDVAA---IDINMGCPKA-FSLSGGMGAALLSKPELIHDI 134
           V Q+G S+      AA+L  +D      I++N GCP    +  G  G +L+ KP+L+ + 
Sbjct: 78  VLQLGGSNVENLAKAAKL--SDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEA 135

Query: 135 LTTLKRNLSIPVTCKIRLLSERHDTV-ELAKRIEKTGVSALA------VHGRRVL 182
           ++ +  N ++PVT K R+  + HD+  EL   I K  VS L+      VH R+ L
Sbjct: 136 MSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYK--VSTLSPTRHFIVHSRKAL 188


>AT3G63510.1 | Symbols:  | FMN-linked oxidoreductases superfamily
           protein | chr3:23450542-23452682 FORWARD LENGTH=419
          Length = 419

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 51  ELIGSTDFVEKGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLV-CNDVAAIDINMG 109
           E+I +   V + T    F     ++  +V Q+G S+      AA+L        I++N G
Sbjct: 83  EMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCG 142

Query: 110 CPKA-FSLSGGMGAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTV-ELAKRIE 167
           CP    +  G  G +L+ KP+L+ + ++ +  N ++PVT K R+  + HD+  EL   I 
Sbjct: 143 CPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIY 202

Query: 168 KTGVSALA------VHGRRVL 182
           K  VS L+      VH R+ L
Sbjct: 203 K--VSTLSPTRHFIVHSRKAL 221