Miyakogusa Predicted Gene

Lj0g3v0165119.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165119.1 Non Chatacterized Hit- tr|C5YD36|C5YD36_SORBI
Putative uncharacterized protein Sb06g024190
OS=Sorghu,47.37,0.000000000007,seg,NULL,CUFF.10342.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   130   2e-31

>AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:408779-410433 FORWARD
           LENGTH=524
          Length = 524

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 71/83 (85%)

Query: 46  QSLSVTCSISKIHNYGTVDYERRPIVRWNDIYRRISLMENPELGSVSVLNQWENEGKNLT 105
           ++ ++ CSIS+++ YGTVDYERRPIV+WN IY++ISLME PELG+ SVLNQWE  G+ LT
Sbjct: 39  KTAAIVCSISQVYGYGTVDYERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLT 98

Query: 106 KWELSRVVKELRKYRRHQRALEV 128
           KWEL RVVKELRKY+R  +ALEV
Sbjct: 99  KWELCRVVKELRKYKRANQALEV 121