Miyakogusa Predicted Gene

Lj0g3v0165099.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165099.1 Non Chatacterized Hit- tr|A5BP26|A5BP26_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.31,0,GAG-POL-RELATED RETROTRANSPOSON,NULL;
UBN2_3,NULL,CUFF.10341.1
         (360 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...   120   1e-27
AT1G34070.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...    49   4e-06

>AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); Has
           707 Blast hits to 705 proteins in 25 species: Archae -
           0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7447690-7448403 REVERSE LENGTH=237
          Length = 237

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 13/216 (6%)

Query: 41  YYL----HHSNGPGLVLVSQPLTGSNYNTWSRSMLVALSVKNKVSFIDGSLPYPDASDPH 96
           YYL    HH +   +  +S+     NY  W       L V  K  FIDG+LP PD   P 
Sbjct: 18  YYLPPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPL 75

Query: 97  HRAWNRSNNVVISWIFNFVSKEIVANVMYSATAMEIWNNLRERFAQKNDPHVFQLCRELM 156
           ++ W + N +V+ W+ N ++ +++ +VMY+ TA ++W +LR  F    D  ++QL R L 
Sbjct: 76  YQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLA 135

Query: 157 SLHQGSDSVSVSYTKLKTISDEFLTYKPIVNCVCG-----VIQLLLAHSETEHVISFLMG 211
           +L QG DSV   + KL  +  E   Y PI  C CG       +      E E    FLMG
Sbjct: 136 TLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMG 195

Query: 212 --LNDSFSQVRGSLLLMGPIPPINKVFSFVIQEENL 245
             LN  F  V   ++   P P +++ F+ V   E++
Sbjct: 196 LKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAESM 231


>AT1G34070.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins
           in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16;
           Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes
           - 0 (source: NCBI BLink). | chr1:12402283-12403209
           FORWARD LENGTH=308
          Length = 308

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 17/185 (9%)

Query: 61  SNYNTWSRSMLVALSVKNKVSFIDGSLPYPDASDPHHRAWNRSNNVV-ISWIFNFVSKEI 119
           SNY+ W    L      + +  IDG+L   +A+D +   W + + +V +S       K+ 
Sbjct: 29  SNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVN---WQKRDGIVKLSLYGTLTPKQF 85

Query: 120 VANVMYSATAMEIWNNLRERFAQKNDPHVFQLCRELMSLHQGSDSVSVSYTKLKTISDEF 179
             + + S+T+ +IW  ++ +F    D    +L  EL +   G   V+  Y K+K ++D  
Sbjct: 86  QGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSL 145

Query: 180 LTYKPIVNCVCGVIQLLLAHSETEHVISFLMGLNDSFSQVRGSLLLMGPIPPINKVFSFV 239
                 V             ++   V+  L GLN  F  +   +    P P  +   + +
Sbjct: 146 RNVDVPV-------------TDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATML 192

Query: 240 IQEEN 244
            +EE+
Sbjct: 193 QEEED 197