Miyakogusa Predicted Gene

Lj0g3v0164369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164369.1 Non Chatacterized Hit- tr|I1JB10|I1JB10_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.14,1e-18,FAMILY NOT NAMED,NULL; B3,B3 DNA binding domain;
DNA-binding pseudobarrel domain,DNA-binding pseudob,CUFF.10275.1
         (69 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19184.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    56   6e-09
AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    54   3e-08
AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    49   5e-07

>AT3G19184.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6637555-6639035 FORWARD LENGTH=277
          Length = 277

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVR 38
           GLSGGWRGF+I H L++ D +VFHLI    FKVYI+R
Sbjct: 183 GLSGGWRGFAIDHQLVDGDAVVFHLIARTTFKVYIIR 219


>AT5G42700.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:17122171-17124177 FORWARD LENGTH=211
          Length = 211

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVR 38
           GLSGGW GF++AHNL   D LVF L++   FKVYI R
Sbjct: 163 GLSGGWMGFAVAHNLAYGDTLVFELVRRTAFKVYITR 199


>AT5G58280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr5:23567338-23568670 FORWARD LENGTH=273
          Length = 273

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 2   GLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVRSQK 41
           GLSGGW+ F++ H L + D L+F L++P KFK+Y+ +  +
Sbjct: 180 GLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFKGNE 219