Miyakogusa Predicted Gene

Lj0g3v0164349.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164349.1 tr|F2DZR3|F2DZR3_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,34.69,0.0000000000007,SUBFAMILY NOT NAMED,NULL; AMSH,NULL;
seg,NULL,CUFF.10401.1
         (357 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3 ...   295   2e-80
AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3 ...   165   5e-41

>AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3
           domain of STAM 1 | chr1:18043925-18047427 REVERSE
           LENGTH=507
          Length = 507

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/353 (47%), Positives = 217/353 (61%), Gaps = 7/353 (1%)

Query: 5   SSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSL 64
            SS  TI+IA SA+++ VDNRI+L+FYFRIADNIL+QA+IFRAEKN+IDLYVMLLRFSSL
Sbjct: 2   GSSFETIDIATSARRIGVDNRISLKFYFRIADNILKQANIFRAEKNVIDLYVMLLRFSSL 61

Query: 65  VTETIPRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVYQQNGRGK 124
             ETIP HRDYR+S +S                        Q+I+EL  +   + N +  
Sbjct: 62  ALETIPSHRDYRTSLKSNKEYLRMRLLDVLTELEKLKPVVQQRIDELYPKLKPRYNVQA- 120

Query: 125 IHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLT 184
            H  N    +S   K +  SY   K   P      Y GS GQQ+    P+EE+ R++S+ 
Sbjct: 121 -HPANGSLGWSSAVKPSFNSYDHAKVRNPPGHNSGYMGSRGQQFLNAAPLEERFRKMSVN 179

Query: 185 LPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDES 244
              P EETLS+HSILGP GL+ QW+PP  D  V+YP+NID SPV IP   S Q  L D  
Sbjct: 180 F-RPNEETLSKHSILGPGGLSAQWQPPKYDTKVQYPSNIDFSPVVIP---SFQQ-LVDSK 234

Query: 245 LNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPV 304
               + S  EP K  ++  +  +E  Q    +E  S+ISFE  E+     +IRQPSPPPV
Sbjct: 235 PMITNGSNDEPEKPIVEPSVASNEKIQKNYTEELSSMISFEEPESVNENNLIRQPSPPPV 294

Query: 305 LAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLA 357
           LAEVQDLVPA+ P+V E  C+ +    D  +R+ESPL+LHI+T+MMD+FM+LA
Sbjct: 295 LAEVQDLVPALCPEVREPECMIENSLPDESLRSESPLELHIATSMMDTFMRLA 347


>AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3
           domain of STAM 3 | chr4:9138053-9141422 REVERSE
           LENGTH=507
          Length = 507

 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 181/351 (51%), Gaps = 10/351 (2%)

Query: 11  INIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETIP 70
           I++   A++++VDNRI LR Y+RIADN+LRQA I+R EKN++DLY+MLLR+SSL++ETIP
Sbjct: 3   IDLNKVAREIEVDNRIPLRNYYRIADNLLRQASIYREEKNVVDLYIMLLRYSSLISETIP 62

Query: 71  RHRDYRSS-PQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNS-RHVYQQNGRG-KIHS 127
            HRDY++S PQ R                       Q +++LN      +Q+G    + S
Sbjct: 63  FHRDYQASLPQER-LGSRKRLRAVINELESLKPEFNQLVDKLNRVEDESRQDGSDLPVVS 121

Query: 128 NNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLTLPP 187
            +S A   P   +   S   I    PT++      +     S    +++Q ++LS    P
Sbjct: 122 YSSDAVEWPPAHKASYSRPDINKPLPTSQPSWTYNNNLTSSSNRTQIDQQFQKLSFDFLP 181

Query: 188 PKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDESLNK 247
           P + TLSRHS LGPNGL  Q   P ++  V+YP+N D    D         S    SLN 
Sbjct: 182 PNQATLSRHSFLGPNGLKRQMVAPKSEIKVQYPSNTDWGSADNSGLIEAGPSSSSASLNG 241

Query: 248 KDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPVLAE 307
               +     S L+S+L+  +    + ++   S    +A E P +   ++QPSPPPVLA+
Sbjct: 242 DSQEV-----STLNSVLSLDDGRWQRHSEAVNSQFISDATEDPFQFVGMKQPSPPPVLAQ 296

Query: 308 VQDLVPAVSP-QVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLA 357
           V   +  + P +V +      IPS +    + S   LH+   +MD F++LA
Sbjct: 297 VHQELAQICPSKVADPRPGPAIPSLEGKEGSNSYQHLHVPVRIMDDFLRLA 347